Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g02757 ATGCGTAACCATGGCAAAAGTAAATATCTGAAAATTGAGACAAGTATGGCTGATGAAGGTACCACTAGAGATAAAGGTGTTTATATCGGTGTAGAGGAGCAAGAGGATCTTCAGGTTGACACCGCAGATAATGAGGGCCTAGAAGATATTTGGAAGGAGATGTCAATGGCAATGGAGTGTTCCAAAGTTGTTTCCGCGAATCCTCTGCCAGATGAAGAAGTAGGAAGAGACCATGAAGAAGAAGAAAGAGATGAGGACTGCGATCATTCTTTGATTTTAAAAGATGATATTGGTTATGTTTGTCGGGTTTGTGGCATTATTGACCGAAGAATTGAAACCATATTTGAGTTTCAGTACAAGGTTAAACGGAGCACAAGGACTTATGCCTCTGACTCCTGTAAGACCAAAGCAAAAGCAGACGTATTTGGAATTAATGTTGTTGGAGATGACTTCATGGTTACTGAAATCCCAGCGCACCCTAGACACATGAAACAGATGAAACCCCATCAAGTTGAAGGATTCAATTTTCTTGGTAGAAATCTTGCAGGTGACCATCCTGGTGGCTGCATCTTAGCCCATGCTCCAGGATCTGGGAAAACATTCATGATAATCAGTTTCATGCAAAGTTTTCTAGGCAAGTATCCGAATGCAAGACCCTTAGTGGTGCTTCCTAAGGGAATATTGTCAACATGGAAAAAGGAGTTTCAAATATGGCAGGTGGAGGACATACCTCTGTATGACTTCTACACAGTGAAGGCAGACAGCAGAAGTCAACAACTGGAAGTGCTGAAGCAATGGATGGAGCAGAAGAGTGTTCTTTTCCTAGGATACAAACAGTTCTCCTCTATTGTCTGTGATAATGGGACCAATAGTACATCATTATCTTGCCAAGATATTTTGCTCAAGGTTCCTTCAATTCTTATTTTAGATGAGGGACACAATCCTAGGAATGAAAACACAGATATGGTGCAGTCCCTTGCAAAAGTTCAAACGCCTAGAAAAGTTGTACTGTCAGGAACCCTTTATCAAAATCATGTCAGGGAGGTGTTTAACATTTTAAATCTCGTTCGGCCAAAATTTTTGAAGATGGAAACATCAAAGCCTATTGTGAGGCGCATTGAAAGTAGAGTTCATATACCAGGAATGAGAAGCTTTTATGAACTCGTTGAAAACACTTTGAAGGGCACAGATTTTAAAGGGAAAGTGGCTGTCATACGAGATTTGCGCGAGATGACAAGCAATGTCCTTCATTATTATAAAGGGGATTTTCTTGAAGAGCTTCCCGGTCTCGTTGATTTTACTGTGGTTCTCAATCTTAGCCCTAAACAAAAGCTAGACATTGAAAGATTAAAGAAGTCATCTCGAAAGTTCAAGATATCTTCTGTAGGCAGTGCTCTCTATCTGCACCCCAAACTGAAATCTTTAGCTGAAAAATGTGGAGAAAATAATATATCTGATGATATACTTGATGCTCTGATAGAAAAATCAGATCCCAGAGATGGTGTGAAGTCCAAATTCTTCTGGAACATGTTAAATTTGTGTGAATCAGCCGGAGAGAAACTTCTAGTATTCAGTCAATACTTGCTTCCTTTGAAATATTTAGAAAGGTTAACCGTGCAAACTAAAGGGTGGAGTCTAGGCAGGGAAATATTCGTAATCTCAGGAGAATCAAGCTATGAGCAGAGAGAATGGTCCATGGAAAAATTTAACAATTCTCCAAATGCCAAAGTCTTCTTTGGCTCCATTAAGGCTTGTGGAGAGGGCATATCATTGGTTGGAGCATCACGCATAGTTATTTTGGACGTTCATCTTAATCCTTCAGTTACTCGCCAAGCTATTGGTCGAGCATTCAGACCGGGCCAGCAGAAGAAAGTCTTTGTGTATCGATTGGTGTCTGCAGATTCTCCAGAAGAGGAGGATAACAACACTTGTTTGAAGAAGGAATTAATTTCAAAAATGTGGTTTGAATGGAACGAGTATTGTGGTGATCGAGCATTTGAAGTTGAGCAAGTTCTTCTCAAAGACTGTAGCGATCTTTTTCTTGAGAGTCCATTGCTAGGAGAAGATGTAAAAGCTCTGTACAAAAGGTAG 2091 0.4017 MRNHGKSKYLKIETSMADEGTTRDKGVYIGVEEQEDLQVDTADNEGLEDIWKEMSMAMECSKVVSANPLPDEEVGRDHEEEERDEDCDHSLILKDDIGYVCRVCGIIDRRIETIFEFQYKVKRSTRTYASDSCKTKAKADVFGINVVGDDFMVTEIPAHPRHMKQMKPHQVEGFNFLGRNLAGDHPGGCILAHAPGSGKTFMIISFMQSFLGKYPNARPLVVLPKGILSTWKKEFQIWQVEDIPLYDFYTVKADSRSQQLEVLKQWMEQKSVLFLGYKQFSSIVCDNGTNSTSLSCQDILLKVPSILILDEGHNPRNENTDMVQSLAKVQTPRKVVLSGTLYQNHVREVFNILNLVRPKFLKMETSKPIVRRIESRVHIPGMRSFYELVENTLKGTDFKGKVAVIRDLREMTSNVLHYYKGDFLEELPGLVDFTVVLNLSPKQKLDIERLKKSSRKFKISSVGSALYLHPKLKSLAEKCGENNISDDILDALIEKSDPRDGVKSKFFWNMLNLCESAGEKLLVFSQYLLPLKYLERLTVQTKGWSLGREIFVISGESSYEQREWSMEKFNNSPNAKVFFGSIKACGEGISLVGASRIVILDVHLNPSVTRQAIGRAFRPGQQKKVFVYRLVSADSPEEEDNNTCLKKELISKMWFEWNEYCGDRAFEVEQVLLKDCSDLFLESPLLGEDVKALYKR* 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g02757 696 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 180 359 IPR014001 -
Phac11g02757 696 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 305 658 IPR027417 -
Phac11g02757 696 Pfam Helicase conserved C-terminal domain 514 619 IPR001650 -
Phac11g02757 696 Gene3D - 136 379 IPR038718 -
Phac11g02757 696 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 154 361 IPR027417 -
Phac11g02757 696 Gene3D - 428 684 IPR027417 -
Phac11g02757 696 Pfam SNF2-related domain 186 444 IPR000330 GO:0005524|GO:0140658
Phac11g02757 696 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 505 672 IPR001650 -
Phac11g02757 696 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 22 695 IPR044567 GO:0080188
Phac11g02757 696 SMART helicmild6 535 620 IPR001650 -
Phac11g02757 696 SMART ultradead3 162 372 IPR014001 -
Phac11g02757 696 CDD SF2_C_SNF 509 631 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g02757 Phac-Chr11 38666448 38670412 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac11g02757 517 638 RAD5 or RAD16-like Gene Family AT5G43530 35.246 1.07e-13 73.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Phac11g02757 SNF2_N 8.9e-20 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g02757 K10875 - gmx:100780454 1169.84