Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g02755 ATGGAATCCTCTGTGTCATCAGCTAAACGCTATTGTTCAACCGGATTTTCCCCTGGCCCTGACAGAGACAAAAGGCAGAAGTTATCAGATGTCGATGACCATGCGAATCCATTTGCAATTTCGGATGTTGTGGTTCGTGTAGAGCATGGGAAATTTGGAAGTGTCACAAAAGAGATAGAGGCTCTTGTAGCCCGAAAAATGCAGATACTTGGACCTTACTTTGCAAAGTATCCCGGACTTGTTAATCAATTGATCAATGTGGTAACTGACCACGATGAAGACACTGCTAAGTTCGAAGATCAACTAGACAATGGTTTGACATATCATAATGTCATAGATTCGGAGGGGAAGGATGTTAGTGCCGCTCCAATTCCTGTTATCCACATTGATTCAGATGTGGAAGATGATGGAGATGAAAGATCTAATGTTCCATCTCATGAAGCTTCAGAAGAGGAAGATGATAGACATAATAAATCTATTGTTCCTTTTCATGAAGCTTCAAAAGAGGAAGATGATAGACATAATATATCTATTGTTCCTTTTCATGAAGCTTCAACAGAGGAAGATGATAGACCAAAAAAATCTATTGTTCCATTTCATGAAGTTTCAGAAGAGGAAGATGATAGACAAAAAAAATCTGTTGCTTCGTTTTATGAAATTGTGTTGCCGAGACAAGTTGCACCATCTCCTTTTGTGATGAAGACAACTAGGCCGCGTACTCCCATGCGTAACCATGGCAAAAGTAAATATCTGAAAATTGAGACAAGTATGGCTGATGAAGGTACCACTAGAGATAAAGGTGTTTATATCGGTGTAGAGGAGCAAGAGGATCTTCAGGTTGACACCGCAGATAATGAGGGCCTAGAAGATATTTGGAAGGAGATGTCAATGGCAATGGAGTGTTCCAAAGTTGTTTCCGCGAATCCTCTGCCAGATGAAGAAGTAGGAAGAGACCATGAAGAAGAAGAAAGAGATGAGGACTGCGATCATTCTTTGATTTTAAAAGATGATATTGGTTATGTTTGTCGGGTTTGTGGCATTATTGACCGAAGAATTGAAACCATATTTGAGTTTCAGTACAAGGTTAAACGGAGCACAAGGACTTATGCCTCTGACTCCTGTAAGACCAAAGCAAAAGCAGACGTATTTGGAATTAATGTTGTTGGAGATGACTTCATGGTTACTGAAATCCCAGCGCACCCTAGACACATGAAACAGATGAAACCCCATCAAGTTGAAGGATTCAATTTTCTTGGTAGAAATCTTGCAGGTGACCATCCTGGTGGCTGCATCTTAGCCCATGCTCCAGGATCTGGGAAAACATTCATGATAATCAGTTTCATGCAAAGTTTTCTAGGCAAGTATCCGAATGCAAGACCCTTAGTGGTGCTTCCTAAGGGAATATTGTCAACATGGAAAAAGGAGTTTCAAATATGGCAGGTGGAGGACATACCTCTGTATGACTTCTACACAGTGAAGGCAGACAGCAGAAGTCAACAACTGGAAGTGCTGAAGCAATGGATGGAGCAGAAGAGTGTTCTTTTCCTAGGATACAAACAGTTCTCCTCTATTGTCTGTGATAATGGGACCAATAGTACATCATTATCTTGCCAAGATATTTTGCTCAAGGTTCCTTCAATTCTTATTTTAGATGAGGGACACAATCCTAGGAATGAAAACACAGATATGGTGCAGTCCCTTGCAAAAGTTCAAACGCCTAGAAAAGTTGTACTGTCAGGAACCCTTTATCAAAATCATGTCAGGGAGGTGTTTAACATTTTAAATCTCGTTCGGCCAAAATTTTTGAAGATGGAAACATCAAAGCCTATTGTGAGGCGCATTGAAAGTAGAGTTCATATACCAGGAATGAGAAGCTTTTATGAACTCGTTGAAAACACTTTGAAGGGCACAGATTTTAAAGGGAAAGTGGCTGTCATACGAGATTTGCGCGAGATGACAAGCAATGTCCTTCATTATTATAAAGGGGATTTTCTTGAAGAGCTTCCCGGTCTCGTTGATTTTACTGTGGTTCTCAATCTTAGCCCTAAACAAAAGCTAGACATTGAAAGATTAAAGAAGTCATCTCGAAAGTTCAAGATATCTTCTGTAGGCAGTGCTCTCTATCTGCACCCCAAACTGAAATCTTTAGCTGAAAAATGTGGAGAAAATAATATATCTGATGATATACTTGATGCTCTGATAGAAAAATCAGATCCCAGAGATGGTGTGAAGTCCAAATTCTTCTGGAACATGTTAAATTTGTGTGAATCAGCCGGAGAGAAACTTCTAGTATTCAGTCAATACTTGCTTCCTTTGAAATATTTAGAAAGGTTAACCGTGCAAACTAAAGGGTGGAGTCTAGGCAGGGAAATATTCGTAATCTCAGGAGAATCAAGCTATGAGCAGAGAGAATGGTCCATGGAAAAATTTAACAATTCTCCAAATGCCAAAGTCTTCTTTGGCTCCATTAAGGCTTGTGGAGAGGGCATATCATTGGTTGGAGCATCACGCATAGTTATTTTGGACGTTCATCTTAATCCTTCAGTTACTCGCCAAGCTATTGGTCGAGCATTCAGACCGGGCCAGCAGAAGAAAGTCTTTGTGTATCGATTGGTGTCTGCAGATTCTCCAGAAGAGGAGGATAACAACACTTGTTTGAAGAAGGAATTAATTTCAAAAATGTGGTTTGAATGGAACGAGTATTGTGGTGATCGAGCATTTGAAGTTGAGCAAGTTCTTCTCAAAGACTGTAGCGATCTTTTTCTTGAGAGTCCATTGCTAGGAGAAGATGTAAAAGCTCTGTACAAAAGGTAG 2814 0.4005 MESSVSSAKRYCSTGFSPGPDRDKRQKLSDVDDHANPFAISDVVVRVEHGKFGSVTKEIEALVARKMQILGPYFAKYPGLVNQLINVVTDHDEDTAKFEDQLDNGLTYHNVIDSEGKDVSAAPIPVIHIDSDVEDDGDERSNVPSHEASEEEDDRHNKSIVPFHEASKEEDDRHNISIVPFHEASTEEDDRPKKSIVPFHEVSEEEDDRQKKSVASFYEIVLPRQVAPSPFVMKTTRPRTPMRNHGKSKYLKIETSMADEGTTRDKGVYIGVEEQEDLQVDTADNEGLEDIWKEMSMAMECSKVVSANPLPDEEVGRDHEEEERDEDCDHSLILKDDIGYVCRVCGIIDRRIETIFEFQYKVKRSTRTYASDSCKTKAKADVFGINVVGDDFMVTEIPAHPRHMKQMKPHQVEGFNFLGRNLAGDHPGGCILAHAPGSGKTFMIISFMQSFLGKYPNARPLVVLPKGILSTWKKEFQIWQVEDIPLYDFYTVKADSRSQQLEVLKQWMEQKSVLFLGYKQFSSIVCDNGTNSTSLSCQDILLKVPSILILDEGHNPRNENTDMVQSLAKVQTPRKVVLSGTLYQNHVREVFNILNLVRPKFLKMETSKPIVRRIESRVHIPGMRSFYELVENTLKGTDFKGKVAVIRDLREMTSNVLHYYKGDFLEELPGLVDFTVVLNLSPKQKLDIERLKKSSRKFKISSVGSALYLHPKLKSLAEKCGENNISDDILDALIEKSDPRDGVKSKFFWNMLNLCESAGEKLLVFSQYLLPLKYLERLTVQTKGWSLGREIFVISGESSYEQREWSMEKFNNSPNAKVFFGSIKACGEGISLVGASRIVILDVHLNPSVTRQAIGRAFRPGQQKKVFVYRLVSADSPEEEDNNTCLKKELISKMWFEWNEYCGDRAFEVEQVLLKDCSDLFLESPLLGEDVKALYKR* 938
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g02755 937 Gene3D - 377 620 IPR038718 -
Phac11g02755 937 SMART ultradead3 403 613 IPR014001 -
Phac11g02755 937 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 421 600 IPR014001 -
Phac11g02755 937 Gene3D - 669 924 IPR027417 -
Phac11g02755 937 Pfam Helicase conserved C-terminal domain 755 860 IPR001650 -
Phac11g02755 937 Pfam SNF2-related domain 427 684 IPR000330 GO:0005524|GO:0140658
Phac11g02755 937 CDD SF2_C_SNF 750 872 - -
Phac11g02755 937 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 746 913 IPR001650 -
Phac11g02755 937 MobiDBLite consensus disorder prediction 129 159 - -
Phac11g02755 937 SMART helicmild6 776 861 IPR001650 -
Phac11g02755 937 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 39 936 IPR044567 GO:0080188
Phac11g02755 937 MobiDBLite consensus disorder prediction 1 28 - -
Phac11g02755 937 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 546 899 IPR027417 -
Phac11g02755 937 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 395 602 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g02755 Phac-Chr11 38666448 38672609 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac11g02755 758 879 RAD5 or RAD16-like Gene Family AT5G43530 35.246 7.58e-14 74.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Phac11g02755 SNF2_N 1.7e-19 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g02755 K10875 - gmx:100795356 1382.85