Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g02752 ATGCCATACTCAACGCATGATAAGACTTCATATGTTGTTGATTACAGCAATCCATTTGCAATATCTGATGTTCTGGATAGTTTAGAAAGTGGAAAATTTGGAAGTGTCACAAAGGACATAGAGGACCTTATAGCCCAGAAAATGCAAATATTGGGCCCTTACTTTGTTAAATATCCCATTCTAGTGGATCAATGGGAGAAAGCGGTAATGAAACATGATGAAGAAATTCCTAAGTTGGAAAATCAACTAGTTACTGTTTGGACGCATCAAAATGTCATAGATCTGGAGGGGGAACACACCAGAAAGGATGTCCCTGCAACACAAAATCATGTTGTGATTATTGATTCAGATGAGGAAGATGATAGAGATGAAAAATCTATGGTCCCATTTCATGAAGTTGTGTTGCCGAAACTAGTTGCACCGTCTCCTGCATTGAAGATACTTGGGTATCAACCTCCCATTCCTTACCCGGGAGAAAGAGATCTAAAAATTGAGACAAGTATGGAGGATAAACCTAACAAGACTCAGAACGATAAAGGTGTTTATGTTGGTGTACAGGAAGAGGAAGAAGATGAGGTTGATATTGAAGATGATGGTCTAGAAGATATTTGGAAGGAGATGTCAATGGCTATAGAATGTTCCAAAGATGTTTCGGTTGATCCTCAGCCAGATGAAGAAGCTGAAGAAGATGATGATGATGATGATGATGATGATTGTGATCATTCTTTTTTCTTAAAAGATGATCTTGGCTATGTTTGTCGCGTTTGTGGGGTTATTGAACGAGGAATTGAAACCATATTTGAGTTTCAATACAAGGTTAAACGAAGCACAAGAACTTATGCGTCTGATTCAAGGAATGCCAAGAAAACAGATGTATTTGGAATTAATGTTGTTAAAGATGACCTCATAGTTACTGAAATCCCAGCGCACCCCAGACACATGAAACAGATGAAACCTCATCAAGTTGAAGGATTCAATTTTCTTGGTAGAAATCTTGCAGGAGACCATCCTGGTGGCTGCATCTTAGCCCATGCTCCAGGATCTGGGAAAACATTCATGATAATCAGTTTCATGCAAAGTTTTCTAGGCAAGTATCCGAATGCAAGACCCTTAGTGGTGCTTCCTAAGGGAATATTGTCAACATGGAAAAAGGAGTTTCAAATATGGCAGGTGGAGGACATACCTCTGTATGACTTCTACACTGTGAAGGCAGACAGCAGAAGTCAACAACTGGAAGTGCTGAAGCAATGGATGGAGAAGAAGAGTATTCTTTTCCTAGGATACAAACAGTTCTCCTCTATTGTCTGTGATAATGGGACCAATAGTACATCATTATCTTGCCAAGATATTTTGCTCAAGGTTCCTTCAATTCTTATTTTAGATGAGGGACACAATCCTAGGAATGAAAACACAGATATGGTGCAGTCCCTCGCAAAAGTTCAAACGCCTAGAAAAGTTGTACTGTCAGGAACCCTTTATCAAAATCATGTCAGGGAGGTGTTTAACATTTTAAATCTTGTTCGACCAAAATTTTTGAAGATGGAAACATCAAAGCCTATTGTGAGGCGCATTGAAAGTAGAGTTCATATACCAGGAACGAAAAACTTCTATGATTTAGTTGAAAACACTTTGCAGAAGGACCCTGATTTTAAAAGGAAAATAGCTGTTATACAAGATTTGCGTGAGATGACGAGCAAGGTACTTCACTATTATAAAGGAGATTTTCTTGATGAGCTTCCTGGTCTTGTTGATTTTACCGTGGTGCTCACTCTTAGCCCTAGACAGAAGCCTGAAGTAGGGAAAATAAAAAAGCTATCTAGCAGAAAGTTCAGGATATCTTCTGTAGGAAGTGCTGTCTATCTGCATCCTAAACTGAAACCACTAGCAGAAAAGTGTGGTGAAAATTCTATATCTGATCATGTAATGGATGATTTGGTAGATAAACTGGATATTAGAGATGGTGTGAAGTCAAAATTTTATTACAACTTGCTAAATCTGTGTGAATCAGCAGGGGAGAAGCTTCTAGTTTTCAGTCAGTATCTGTTACCTTTGAAATATTTAGAAAGGTTGACTATGAAGTGGAAAGGCTGGAGTCTTGGAAGAGAAATTTTTGTAATCTCAGGAGAATCAAGCTCTGAGCACCGAGAATGGTCCATGGAAAAATTTAACAATTCTCGTGAAGCCAAAGTCTTCTTTGGCTCAATCAAGGCATGTGGAGAGGGTATATCACTGGTTGGTGCCTCTCGCATAATTATCTTGGACGTTCATCTCAATCCATCGGTTACACGTCAAGCTATAGGTCGTGCATTCAGACCTGGCCAGACGAAGAAGGTTTTTGTGTATCGTTTAGTATCCGCTGATTCTCCAGAAGAGGAAGACCACCATGTTTGTTTCAAGAAAGAATTGATTTCAAAAATGTGGTTTGAATGGAATGAGTATTGCGGTGATCGAGCTTTTGAAGTTGAGGCAGTTGAGGTGAAAGAGTGTGGTGATGAATTTCTTGAAAGTCCACTCTTAGGGGAGGATGTAAAAGCTTTATATAAAAGGTGGTCAAGTGAATCAGAGCCTGGCTATCCATATAAACAGAACAAGAGAAATTGA 2601 0.391 MPYSTHDKTSYVVDYSNPFAISDVLDSLESGKFGSVTKDIEDLIAQKMQILGPYFVKYPILVDQWEKAVMKHDEEIPKLENQLVTVWTHQNVIDLEGEHTRKDVPATQNHVVIIDSDEEDDRDEKSMVPFHEVVLPKLVAPSPALKILGYQPPIPYPGERDLKIETSMEDKPNKTQNDKGVYVGVQEEEEDEVDIEDDGLEDIWKEMSMAIECSKDVSVDPQPDEEAEEDDDDDDDDDCDHSFFLKDDLGYVCRVCGVIERGIETIFEFQYKVKRSTRTYASDSRNAKKTDVFGINVVKDDLIVTEIPAHPRHMKQMKPHQVEGFNFLGRNLAGDHPGGCILAHAPGSGKTFMIISFMQSFLGKYPNARPLVVLPKGILSTWKKEFQIWQVEDIPLYDFYTVKADSRSQQLEVLKQWMEKKSILFLGYKQFSSIVCDNGTNSTSLSCQDILLKVPSILILDEGHNPRNENTDMVQSLAKVQTPRKVVLSGTLYQNHVREVFNILNLVRPKFLKMETSKPIVRRIESRVHIPGTKNFYDLVENTLQKDPDFKRKIAVIQDLREMTSKVLHYYKGDFLDELPGLVDFTVVLTLSPRQKPEVGKIKKLSSRKFRISSVGSAVYLHPKLKPLAEKCGENSISDHVMDDLVDKLDIRDGVKSKFYYNLLNLCESAGEKLLVFSQYLLPLKYLERLTMKWKGWSLGREIFVISGESSSEHREWSMEKFNNSREAKVFFGSIKACGEGISLVGASRIIILDVHLNPSVTRQAIGRAFRPGQTKKVFVYRLVSADSPEEEDHHVCFKKELISKMWFEWNEYCGDRAFEVEAVEVKECGDEFLESPLLGEDVKALYKRWSSESEPGYPYKQNKRN* 867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g02752 866 SMART helicmild6 688 773 IPR001650 -
Phac11g02752 866 Gene3D - 284 537 IPR038718 -
Phac11g02752 866 Pfam SNF2-related domain 337 525 IPR000330 GO:0005524|GO:0140658
Phac11g02752 866 Pfam Helicase conserved C-terminal domain 662 772 IPR001650 -
Phac11g02752 866 Gene3D - 580 832 IPR027417 -
Phac11g02752 866 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 170 853 IPR044567 GO:0080188
Phac11g02752 866 MobiDBLite consensus disorder prediction 222 239 - -
Phac11g02752 866 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 331 510 IPR014001 -
Phac11g02752 866 SMART ultradead3 313 523 IPR014001 -
Phac11g02752 866 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 662 825 IPR001650 -
Phac11g02752 866 MobiDBLite consensus disorder prediction 214 239 - -
Phac11g02752 866 CDD SF2_C_SNF 645 784 - -
Phac11g02752 866 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 299 512 IPR027417 -
Phac11g02752 866 Coils Coil 62 82 - -
Phac11g02752 866 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 456 811 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g02752 Phac-Chr11 38648473 38655325 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac11g02752 670 801 RAD5 or RAD16-like Gene Family AT5G43530 34.091 4.93e-15 77.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Phac11g02752 SNF2_N 3.2e-19 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g02752 K10875 - gmx:100780454 1422.91