Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g02751 ATGGAGCCCTCTGTTGATGTTGTGTCAAGTGCAAAACGCCCTCGAGCAATGGGTTTTTCTTCTGACCCGGGTGGAGACAAAAGACTGAAATTTTCAAGTTATAGCATGCCATACTCAACGCATGATAAGACTTCATATGTTGTTGATTACAGCAATCCATTTGCAATATCTGATGTTCTGGATAGTTTAGAAAGTGGAAAATTTGGAAGTGTCACAAAGGACATAGAGGACCTTATAGCCCAGAAAATGCAAATATTGGGCCCTTACTTTGTTAAATATCCCATTCTAGTGGATCAATGGGAGAAAGCGGTAATGAAACATGATGAAGAAATTCCTAAGTTGGAAAATCAACTAGTTACTGTTTGGACGCATCAAAATGTCATAGATCTGGAGGGGGAACACACCAGAAAGGATGTCCCTGCAACACAAAATCATGTTGTGATTATTGATTCAGATGAGGAAGATGATAGAGATGAAAAATCTATGGTCCCATTTCATGAAGTTGTGTTGCCGAAACTAGTTGCACCGTCTCCTGCATTGAAGATACTTGGGTATCAACCTCCCATTCCTTACCCGGGAGAAAGAGATCTAAAAATTGAGACAAGTATGGAGGATAAACCTAACAAGACTCAGAACGATAAAGGTGTTTATGTTGGTGTACAGGAAGAGGAAGAAGATGAGGTTGATATTGAAGATGATGGTCTAGAAGATATTTGGAAGGAGATGTCAATGGCTATAGAATGTTCCAAAGATGTTTCGGTTGATCCTCAGCCAGATGAAGAAGCTGAAGAAGATGATGATGATGATGATGATGATGATTGTGATCATTCTTTTTTCTTAAAAGATGATCTTGGCTATGTTTGTCGCGTTTGTGGGGTTATTGAACGAGGAATTGAAACCATATTTGAGTTTCAATACAAGGTTAAACGAAGCACAAGAACTTATGCGTCTGATTCAAGGAATGCCAAGAAAACAGATGTATTTGGAATTAATGTTGTTAAAGATGACCTCATAGTTACTGAAATCCCAGCGCACCCCAGACACATGAAACAGATGAAACCTCATCAAGTTGAAGGATTCAATTTTCTTGGTAGAAATCTTGCAGGAGACCATCCTGGTGGCTGCATCTTAGCCCATGCTCCAGGATCTGGGAAAACATTCATGATAATCAGTTTCATGCAAAGTTTTCTAGGCAAGTATCCGAATGCAAGACCCTTAGTGGTGCTTCCTAAGGGAATATTGTCAACATGGAAAAAGGAGTTTCAAATATGGCAGGTGGAGGACATACCTCTGTATGACTTCTACACTGTGAAGGCAGACAGCAGAAGTCAACAACTGGAAGTGCTGAAGCAATGGATGGAGAAGAAGAGTATTCTTTTCCTAGGATACAAACAGTTCTCCTCTATTGTCTGTGATAATGGGACCAATAGTACATCATTATCTTGCCAAGATATTTTGCTCAAGGTTCCTTCAATTCTTATTTTAGATGAGGGACACAATCCTAGGAATGAAAACACAGATATGGTGCAGTCCCTCGCAAAAGTTCAAACGCCTAGAAAAGTTGTACTGTCAGGAACCCTTTATCAAAATCATGTCAGGGAGGTGTTTAACATTTTAAATCTTGTTCGACCAAAATTTTTGAAGATGGAAACATCAAAGCCTATTGTGAGGCGCATTGAAAGTAGAGTTCATATACCAGGAACGAAAAACTTCTATGATTTAGTTGAAAACACTTTGCAGAAGGACCCTGATTTTAAAAGGAAAATAGCTGTTATACAAGATTTGCGTGAGATGACGAGCAAGGTACTTCACTATTATAAAGGAGATTTTCTTGATGAGCTTCCTGGTCTTGTTGATTTTACCGTGGTGCTCACTCTTAGCCCTAGACAGAAGCCTGAAGTAGGGAAAATAAAAAAGCTATCTAGCAGAAAGTTCAGGATATCTTCTGTAGGAAGTGCTGTCTATCTGCATCCTAAACTGAAACCACTAGCAGAAAAGTGTGGTGAAAATTCTATATCTGATCATGTAATGGATGATTTGGTAGATAAACTGGATATTAGAGATGGTGTGAAGTCAAAATTTTATTACAACTTGCTAAATCTGTGTGAATCAGCAGGGGAGAAGCTTCTAGTTTTCAGTCAGTATCTGTTACCTTTGAAATATTTAGAAAGGTTGACTATGAAGTGGAAAGGCTGGAGTCTTGGAAGAGAAATTTTTGTAATCTCAGGAGAATCAAGCTCTGAGCACCGAGAATGGTCCATGGAAAAATTTAACAATTCTCGTGAAGCCAAAGTCTTCTTTGGCTCAATCAAGGCATGTGGAGAGGGTATATCACTGGTTGGTGCCTCTCGCATAATTATCTTGGACGTTCATCTCAATCCATCGGTTACACGTCAAGCTATAGGTCGTGCATTCAGACCTGGCCAGACGAAGAAGGTTTTTGTGTATCGTTTAGTATCCGCTGATTCTCCAGAAGAGGAAGACCACCATGTTTGTTTCAAGAAAGAATTGATTTCAAAAATGTGGTTTGAATGGAATGAGTATTGCGGTGATCGAGCTTTTGAAGTTGAGGCAGTTGAGGTGAAAGAGTGTGGTGATGAATTTCTTGAAAGTCCACTCTTAGGGGAGGATGTAAAAGCTTTATATAAAAGGTGGTCAAGTGAATCAGAGCCTGGCTATCCATATAAACAGAACAAGAGAAATTGA 2706 0.3936 MEPSVDVVSSAKRPRAMGFSSDPGGDKRLKFSSYSMPYSTHDKTSYVVDYSNPFAISDVLDSLESGKFGSVTKDIEDLIAQKMQILGPYFVKYPILVDQWEKAVMKHDEEIPKLENQLVTVWTHQNVIDLEGEHTRKDVPATQNHVVIIDSDEEDDRDEKSMVPFHEVVLPKLVAPSPALKILGYQPPIPYPGERDLKIETSMEDKPNKTQNDKGVYVGVQEEEEDEVDIEDDGLEDIWKEMSMAIECSKDVSVDPQPDEEAEEDDDDDDDDDCDHSFFLKDDLGYVCRVCGVIERGIETIFEFQYKVKRSTRTYASDSRNAKKTDVFGINVVKDDLIVTEIPAHPRHMKQMKPHQVEGFNFLGRNLAGDHPGGCILAHAPGSGKTFMIISFMQSFLGKYPNARPLVVLPKGILSTWKKEFQIWQVEDIPLYDFYTVKADSRSQQLEVLKQWMEKKSILFLGYKQFSSIVCDNGTNSTSLSCQDILLKVPSILILDEGHNPRNENTDMVQSLAKVQTPRKVVLSGTLYQNHVREVFNILNLVRPKFLKMETSKPIVRRIESRVHIPGTKNFYDLVENTLQKDPDFKRKIAVIQDLREMTSKVLHYYKGDFLDELPGLVDFTVVLTLSPRQKPEVGKIKKLSSRKFRISSVGSAVYLHPKLKPLAEKCGENSISDHVMDDLVDKLDIRDGVKSKFYYNLLNLCESAGEKLLVFSQYLLPLKYLERLTMKWKGWSLGREIFVISGESSSEHREWSMEKFNNSREAKVFFGSIKACGEGISLVGASRIIILDVHLNPSVTRQAIGRAFRPGQTKKVFVYRLVSADSPEEEDHHVCFKKELISKMWFEWNEYCGDRAFEVEAVEVKECGDEFLESPLLGEDVKALYKRWSSESEPGYPYKQNKRN* 902
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g02751 901 Coils Coil 97 117 - -
Phac11g02751 901 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 491 846 IPR027417 -
Phac11g02751 901 Gene3D - 615 867 IPR027417 -
Phac11g02751 901 Pfam SNF2-related domain 372 560 IPR000330 GO:0005524|GO:0140658
Phac11g02751 901 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 334 547 IPR027417 -
Phac11g02751 901 Gene3D - 319 572 IPR038718 -
Phac11g02751 901 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 366 545 IPR014001 -
Phac11g02751 901 CDD SF2_C_SNF 680 819 - -
Phac11g02751 901 SMART ultradead3 348 558 IPR014001 -
Phac11g02751 901 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 697 860 IPR001650 -
Phac11g02751 901 MobiDBLite consensus disorder prediction 257 274 - -
Phac11g02751 901 MobiDBLite consensus disorder prediction 1 23 - -
Phac11g02751 901 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 205 888 IPR044567 GO:0080188
Phac11g02751 901 SMART helicmild6 723 808 IPR001650 -
Phac11g02751 901 MobiDBLite consensus disorder prediction 249 274 - -
Phac11g02751 901 Pfam Helicase conserved C-terminal domain 697 807 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g02751 Phac-Chr11 38648473 38655325 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac11g02751 705 836 RAD5 or RAD16-like Gene Family AT5G43530 34.091 4.54e-15 78.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Phac11g02751 SNF2_N 3.4e-19 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g02751 K10875 - gmx:100780454 1453.73