Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g02718 ATGGCATCAAGTAATTTATTCTTTGACGATATTCGAAGCAAAGTCGATGTTGATCCTCCTCAAAATGAAGAGTCAACAGATGTTGGTGAATTAGTAAATGATCCTGCACAAACTGCACTTAAACCTAATGGTACCGTTTCAAGCAGTGTTCGTGAGCTATTAGAGTGCCCTGTATGCTTGAATGCCATGTACCCTCCAATCCATCAGTGTTCAAATGGTCACACAATATGCTCTGGTTGCAAACCCAGGGTCCATAACAGGTGCCCTACTTGTAGGCATGAGCTTGGCAATATCAGATGCCTTGCACTGGAGAAAGTGGCTGCATCTTTGGAACTTCCGTGTAAATATCAAGGATTCGGGTGCATTGGAATATATCCCTATTACAGCAAGCTAAAGCATGAATCACAATGTGCATATAGACCTTACAACTGTCCATATGCTGGTTCAGAATGCTCTATTATGGGTGATATACCCTACCTGGTGGCTCATCTGAAAGACGACCACAAAGTGGACATGCACAATGGTAGCACTTTCAACCATCGCTATGTCAAATCAAATCCACATGAAGTTGAAAATGCCACATGGATGTTAACGGTCTTCAGCTGCTTTGGTCAGTATTTTTGTCTACATTTTGAAGCTTTTCAGCTTGGAATGGCTCCTGTCTACATAGCCTTTTTGCGGTTTATGGGTGATGATAATGAAGCAAAAAATTATAGCTACAGTTTAGAGGTAGGTGGAAATGGGAGGAAGATGATTTGGCAGGGTGTGCCTAGAAGCATCCGGGACAGCCACCGGAAGGTTCGTGACAGTTTTGATGGTCTCATCATCCAGAGAAATATGGCCCTTTTCTTTTCCGGCGGTGACCGGAAGGAATTGAAGCTAAGGGTTACTGGTAGAATTTGGAAAGAACAATGA 915 0.4295 MASSNLFFDDIRSKVDVDPPQNEESTDVGELVNDPAQTALKPNGTVSSSVRELLECPVCLNAMYPPIHQCSNGHTICSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQGFGCIGIYPYYSKLKHESQCAYRPYNCPYAGSECSIMGDIPYLVAHLKDDHKVDMHNGSTFNHRYVKSNPHEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDNEAKNYSYSLEVGGNGRKMIWQGVPRSIRDSHRKVRDSFDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQ* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g02718 304 FunFam E3 ubiquitin-protein ligase SINAT5-like 165 297 - -
Phac11g02718 304 SUPERFAMILY TRAF domain-like 109 301 - -
Phac11g02718 304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 109 164 IPR013083 -
Phac11g02718 304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 108 IPR013083 -
Phac11g02718 304 SUPERFAMILY RING/U-box 48 96 - -
Phac11g02718 304 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 165 297 IPR008974 GO:0005515
Phac11g02718 304 FunFam E3 ubiquitin-protein ligase SINAT5-like 14 107 - -
Phac11g02718 304 ProSiteProfiles Zinc finger SIAH-type profile. 109 169 IPR013010 GO:0008270
Phac11g02718 304 ProSiteProfiles Zinc finger RING-type profile. 56 92 IPR001841 -
Phac11g02718 304 FunFam E3 ubiquitin-protein ligase SINAT3 108 164 - -
Phac11g02718 304 CDD RING-HC_SIAHs 54 92 - -
Phac11g02718 304 Pfam Seven in absentia protein family 98 297 IPR018121 GO:0005737|GO:0006511|GO:0007275
Phac11g02718 304 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 41 303 - -
Phac11g02718 304 CDD Sina 170 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g02718 Phac-Chr11 38098711 38103929 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac11g02718 47 304 C3H Transcription Factor Family AT2G41980 79.457 2.21e-161 450
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g02718 K04506 - gmx:100793457 641.728