LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phac11g02713	ATGTCTATGCACCATGAAAATTCTGATACAAAAGAAGTAATATGTCCCCAGAGAAGGCTAACAAATCTGATGCATCATTCTGGGAACAAGTTCTGCGCTGATTGTGGAACTCCAGAGCCAAAATGGGTATCTTCAAGTCTTGGAGTATTTATTTGCATCAAGTGTTCTGGCATACATAGAAGTCTAGGAGTCCACATATCAAAGGTTCTATCATTGAAGTTAGATGAATGGACAGATGAACAAGTTGATGCATTAGCAAAATTAGGAGGAAATACACTATTAAACAAGAAGTATGAAGCTTGCCTCCCAAGTAACATGAGAAAACCAAAACCACATTCTTCCATTGAAGAACGCTCTGAATTTATTCGGAGAAAATATGAGATGCAACAGTTTATGGGGTGTGATGACAATATGCCAGGCACCATTGTCCAATCTCAAGGAAGAAGTATATCACTTGCTCAGTGCAGCTCTTCATACTATCATGCTTTTATGGACAAAAAACCATCTGAAAAACTTCCAAGCAAAACTCGTATTGGGAGTGCATTCCGAAATAGTTGGGGAAGAAAAGATTCTGAACACAAGTCAAAGAAAAGTACCTCATTGGCAGGTATGGTTGAATTTGTTGGATTGATTAAGGTTAATGTGGTTAAAGGCACTCACCTAGCCGTTCGAGACGTAATGACTAGTGACCCTTATGTCATCCTTTCTTTGGGTCACCAATCAGTAAAAACACGAGTCATCAAGAACAATTTGAATCCAGTCTGGAATGAAAGTCTAATGCTTTCAATTCCAGAGAACATTCCTCCTCTAAAAGTGCTTGTGTATGACAAGGATACATTTTCAACTGATGATTTTATGGGAGAGGCTGAAATAGACATTCAACCTCTAGTTATAGCAGCAAAGGCCTATGAGAAATCCACTATCAATGAGTCCATGCAGCTTGGTAAATTTGTAGCAAGCAAGGACAACACCCTTGTTAGAGATGGAATCATATCCCTTGATGAAGGCAAGATCAAACAAGAGATCTCAGTGAGACTGCAGAATATTGAGAGAGGTGAACTTGAGCTTGAGCTTGAGTGTGTTCCTCTCACTCAATAG	1098	0.3925	MSMHHENSDTKEVICPQRRLTNLMHHSGNKFCADCGTPEPKWVSSSLGVFICIKCSGIHRSLGVHISKVLSLKLDEWTDEQVDALAKLGGNTLLNKKYEACLPSNMRKPKPHSSIEERSEFIRRKYEMQQFMGCDDNMPGTIVQSQGRSISLAQCSSSYYHAFMDKKPSEKLPSKTRIGSAFRNSWGRKDSEHKSKKSTSLAGMVEFVGLIKVNVVKGTHLAVRDVMTSDPYVILSLGHQSVKTRVIKNNLNPVWNESLMLSIPENIPPLKVLVYDKDTFSTDDFMGEAEIDIQPLVIAAKAYEKSTINESMQLGKFVASKDNTLVRDGIISLDEGKIKQEISVRLQNIERGELELELECVPLTQ*	366

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phac11g02713	365	CDD	ArfGap	20	126	-	-
	Phac11g02713	365	SMART	C2_3c	210	305	IPR000008	-
	Phac11g02713	365	Pfam	C2 domain	210	296	IPR000008	-
	Phac11g02713	365	ProSiteProfiles	C2 domain profile.	191	307	IPR000008	-
	Phac11g02713	365	ProSiteProfiles	ARF GTPase-activating proteins domain profile.	17	139	IPR001164	GO:0005096
	Phac11g02713	365	SMART	arf_gap_3	17	139	IPR001164	GO:0005096
	Phac11g02713	365	FunFam	ADP-ribosylation factor GTPase-activating protein AGD12	207	365	-	-
	Phac11g02713	365	CDD	C2_ArfGAP	208	352	-	-
	Phac11g02713	365	Gene3D	Arf GTPase activating protein	2	138	IPR038508	-
	Phac11g02713	365	PRINTS	HIV Rev interacting protein signature	48	65	IPR001164	GO:0005096
	Phac11g02713	365	PRINTS	HIV Rev interacting protein signature	69	90	IPR001164	GO:0005096
	Phac11g02713	365	PRINTS	HIV Rev interacting protein signature	29	48	IPR001164	GO:0005096
	Phac11g02713	365	Gene3D	C2 domain	207	365	IPR035892	-
	Phac11g02713	365	FunFam	stromal membrane-associated protein 1 isoform X1	2	137	-	-
	Phac11g02713	365	Pfam	Putative GTPase activating protein for Arf	18	132	IPR001164	GO:0005096
	Phac11g02713	365	PANTHER	ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12	13	365	IPR044518	GO:0005096\|GO:0005543
	Phac11g02713	365	SUPERFAMILY	C2 domain (Calcium/lipid-binding domain, CaLB)	206	300	IPR035892	-
	Phac11g02713	365	SUPERFAMILY	ArfGap/RecO-like zinc finger	17	132	IPR037278	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phac11g02713	Phac-Chr11	38086149	38091545	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Phac11g02713	17	365	C2H2 Transcription Factor Family	AT4G21160	48.138	5.38e-121	351

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Phac11g02713	K12486		-	gmx:100789552	664.07