Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g02680 ATGAAATTGGGAAGTTTTGTGACTATTATGAAGAGCATGTGTTATGTACATGTTGTCAATGCCTATCTGATCGAACCTGTTGCGACCATTGGTCCTAGTATGCTTCCTACAATCGATTTGACAGCAAGTTGGTTCTTAACTGAGAAGATCTCAACCCGATGGGGTAAAGTTGATCGTGGAGATATTGTAATCTTGCGTGACCCTCAAAACCCTAGACTCATGCTGACCAAACGTGTTGTTGGATTGGAGGGTGATAGGATTACACACAAGTACAATCGTGAAACCAATAAATTGAAGGGTGGTGGTTTTACTTACATTTCCAAACCGAAGACCCATGAATTGGAGGGTGATAGTTTAACATACAGTTCCAATCTTGAGACCAATGACTTGGTGGGTGATAATTCTTCACACATTTCCTATCCTGAGAACCTAAAGCCTGAGACGGTTGTGGTTCCAAAGGGTAGCGTTTGGGTAGAGGGAGATTACAAGTTTAACAGCCGTGATTCTAGAAAATTTGGTCCTGTTCCTTATGACCTTATCCGCGGGAAGTTATTTTGGAGGACCACTGGTCCTGGTATGTTTCCTACAATCAATTTGACAGCAAGTTGGTTCTTAACTGAGAAGATCTCAACACGATGGGGTAAAGTTGATCGTGGAGATATTGTAATCTTGCGTGACCCTCAAAACCCTAGACTCATGCTGACCAAACGTGTGGTTGGATTGGAGGGTGATAGGATTACACACAAGTACAATCGTGAAACCAATAAATTGAAGGGTGGTGGTTTTACTTACATTTCCAAGCCTAAGACCCATGAATTAGAGGGTGATAGTTTAACATACAGTTCCAATCCTGAGACCAATGACTTGGTGGGTGATAATTCCTCACACATTTCCTATCCTGAGAACCTAAAGCCTGAGACGATTGTGGTTCCAAAGGGTAGTGTTTGGGTAGAGGGAGATTACAAGTTTAACAGCCGTGATTCTAGAAAATTTGGTCCTGTTCCTTATGACCTTATCCGTGGGAGATATACCCATTTAAATATTTTGGACCTTTCTGGCATAAATGATCTGAAGCAAAGCATTCAATCATGGAAGCTACAATCTTTTGCAACATCACTCTTTAGTTTTGAAAGGCAAAACCCTATCAGTTTGGACTCCGTTGTCTATTCCTAG 1173 0.4152 MKLGSFVTIMKSMCYVHVVNAYLIEPVATIGPSMLPTIDLTASWFLTEKISTRWGKVDRGDIVILRDPQNPRLMLTKRVVGLEGDRITHKYNRETNKLKGGGFTYISKPKTHELEGDSLTYSSNLETNDLVGDNSSHISYPENLKPETVVVPKGSVWVEGDYKFNSRDSRKFGPVPYDLIRGKLFWRTTGPGMFPTINLTASWFLTEKISTRWGKVDRGDIVILRDPQNPRLMLTKRVVGLEGDRITHKYNRETNKLKGGGFTYISKPKTHELEGDSLTYSSNPETNDLVGDNSSHISYPENLKPETIVVPKGSVWVEGDYKFNSRDSRKFGPVPYDLIRGRYTHLNILDLSGINDLKQSIQSWKLQSFATSLFSFERQNPISLDSVVYS* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g02680 390 CDD S26_SPase_I 190 342 IPR019533 GO:0004252|GO:0006465
Phac11g02680 390 Gene3D Umud Fragment, subunit A 18 191 - -
Phac11g02680 390 SUPERFAMILY LexA/Signal peptidase 22 188 IPR036286 -
Phac11g02680 390 CDD S26_SPase_I 25 183 IPR019533 GO:0004252|GO:0006465
Phac11g02680 390 Pfam Signal peptidase, peptidase S26 193 343 IPR019533 GO:0004252|GO:0006465
Phac11g02680 390 Pfam Signal peptidase, peptidase S26 7 186 IPR019533 GO:0004252|GO:0006465
Phac11g02680 390 Gene3D Umud Fragment, subunit A 192 348 - -
Phac11g02680 390 NCBIfam signal peptidase I 190 344 IPR000223 GO:0006508|GO:0008236|GO:0016020
Phac11g02680 390 NCBIfam signal peptidase I 8 187 IPR000223 GO:0006508|GO:0008236|GO:0016020
Phac11g02680 390 PANTHER PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATED 5 187 - -
Phac11g02680 390 SUPERFAMILY LexA/Signal peptidase 188 345 IPR036286 -
Phac11g02680 390 PRINTS Bacterial leader peptidase 1 (S26A) family signature 75 87 IPR000223 GO:0006508|GO:0008236|GO:0016020
Phac11g02680 390 PRINTS Bacterial leader peptidase 1 (S26A) family signature 151 170 IPR000223 GO:0006508|GO:0008236|GO:0016020
Phac11g02680 390 PRINTS Bacterial leader peptidase 1 (S26A) family signature 22 38 IPR000223 GO:0006508|GO:0008236|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g02680 Phac-Chr11 37449725 37455229 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac11g02680 193 342 MADS-box Gene Family AT1G29960 37.333 5.06e-21 86.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g02680 K09647 - gmx:100526949 189.889