Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g02617 ATGAGTCCTCCAGCTGAATCCAACATGAGGGAAGATGGCAAGCCAGAAAATGCCACAGACCAAGTTGTGTCTCGCTTCGTAGAGTTCCTCAAGAATGAATTAGCATTGGAAGAGAAAAGCTGTAAAGAAGCAATCGATTTGCTAGGAGAAACCAAACATATTCTTCTGACAAATTTTTCATCAATGGGGAATGGAACGGCTGAAGAAGCAGAGCGGTATTGGTTTGCTTTTATTTCATACTCTGTCAAGAAATTGATCCACAACAATGAGGAGGCTGGGAAGGAAGAGAATGCGATCACTGGGCTTAGCTTGTGTCGTATATTGAGAGCAGCTAAGCTCAACATTGCAGATTTTTTCAAAGAACTTCCACAGTTTGTTGTTAAGGCTGGTCCAACTTTGAGTAATCTATATGGAACAGATTGGGAAAACAAGCTGGAGGCAAAGGAGATACATGCCAATGCTATTCATTTAAAGATTCTTAGCAAGTACTATAAACGTGTATTTGGAGAGTTCTTTGTGACAACTGACTCAAATGCCGAAAGGAACTCATCTGTGATTGTTCATGCATCTGAATACCATCGATTTGGATGGTTGCTTTTCTTGGCTCTTCGTGTTCATGCTTTCAGCCGCTTCAAAGACTTGGTGACTTGCACCAATGGTCTAATTTCAATCTTGGCCATCTTAATTATTCATGTTCCTACTCGATTTCGGAATTTCAACATTCATGACTCCTCACGCTTTGTTAAGAAAAATAATAAAGGTGTGGACCTCCTTGCTTCACTTTGCAACATATACAACACTACTGAAGATGAGTTGAGGAAAACAATGGAGAAAGCCAATAATGTAATAGCAGATATATTGAAGAAGAAGCCCTGCTTGGCATCTGAATGCGAAACTGAAAACCTAGAAAATATCGATAAAGATGGTTTGACCTATTTTAAAGACCTGATGGAAGAATCTTCTCTACCTTCTAGTTTAAATTTATTAGAAAAAGATTATGATTACATGATTCGCACCAAGAGTGAACTAGATGAGAGGTTATTCATTAATGAGGATGACAGCCTGTTAGCTTCAGGAAGCTTGTCTGGAGGTTCTGTTTCAGCAGGTGGTGTAAAGAGGAAATTTGATTCACTGGCATCACCTGTTAAGACCATTACAAGTCCACTATCACCTCACCGCTCTCCCTCGTCACATCCTAATGGCATCCCAGGTAGCGGGAACTCAAAGATGGCAGCCACCCCTGTAAGCACAGCAATGACTACCGCAAAGTGGCTTCGAACTGTCATTTCTCCACTTGCACCGAAACCCTCTCCAGAGCTGGAACGATTTCTGACATCATGTGATAGGGATGTTACAAGTGATGTAGTGCGCAGGGCACAGATTATATTGCAGGCTACATTTCCTAGTAGTCCACTTGGAGAACTATGTGTAACTGGAAGCCTGCAAAGTGCAAACCTCATGGACAATATATGGGCAGAACAACGAAGATTGGAAGCACTGAAGTTATACTACAGGGTATTGGAGGCAATGTGCAGAGCTGAAGCTCAAGTTTTTCATGCAACTAATTTGACCCCTCTTCTTACCAATGAGAGGTTCCATCGGTGTATGCTTGCATGTTCTGCAGAATTAGTCCTGGCAACTCATAAGACTGTAACAATGTTGTTCCCTGCAGTACTTGAGAGGACTGGAATTACAGCCTTTGATCTTAGCAAGGTGATTGAAAGTTTCATTAGACATGAAGAATCTCTGCCAAGAGAATTGAGGCGACATCTGAATTCATTGGAAGAACGACTTCTGGAGAGCATGGTATGGGAAAAGGGTTCTTCAATGTATAATTCTTTGGCAGTTGCCAGACCCGCCCTTTCTGCTGAGATAAATCGCCTGGGACTGTTAGCTGAACCAATGCCATCATTGGACGAAATTGCAATGCAAATTAACTTCTCTTGTGGAGGACTGCCACCAGTGCCTACCTTGCCTAAGCTTGAAAGTTCACCAACTCAGAATGGGGATATCAGATCACCCAAGCGAAATGTATTGATGGAAAGAAATTCTCTAACTTCTCCTGTGAAAGATCGGCTTCTTCCCTTCAGCAACCTTAAGTCAAAACTACCCCCACCACCTTTGCAGTCTGCATTTTCCAGCCCAACAAAGCCAAATCCAGCAGGTGGAGGGGAAACGTGTGCAGAAACTGGGATCAACATCTTTTTTGGCAAGATCATTAAGTTGGGAGCAGTCAGAATTAGTGGCATGGTCGAAAGACTACAATTATCTCAGCAGATAAGGGAGAATGTATACTGTCTTTTCCAGCGGATCCTAAATCAACGGACATCTCTCTTTTTCAACCATCATATAGACCAGATCATCTTGTGTTGTTTCTATGGAGTTGCAAAGATTTCACAATTAAACCTAACTTTTAGAGAGATAGTATACAACTATAGAAAGCAGCCACATTGCAAACCACAAGTTTTCCGCAGTGTATTTGTTGATTGGTCATTAGCACGCCGAAATGGGAGAACAGGACAGGAGCATGTTGACATCATCACCTTTTACAATGAAATATTTATTCCCTCTGTAAAGCCACTGCTGGTTGAACTTGACCCTTCTGGAGCAACTACAAAAAGCGACCGAATACCTGAAGTTAATAATAAAAATGATGGCCATTTAGCTCAATGTCCAGGATCTCCTAAAATATCATCTTTCCCTACCCTTCCCGATATGTCTCCAAAAAAAGTATCTGCTACACACAATGTATATGTCTCTCCATTACGATCGTCCAAGATGGATGCTCTAATATCACACAGCTCAAAAAGCTATTATGCATGTGTTGGGGAGAGCACTCATGCTTATCAGAGCCCTTCAAAAGACCTGACTGCCATCAATAACCGTTTGAATGGCAACAGGAAGGTGAGAGGACCCCTGAATTTTGATGATGTTGATGTGGGCTTGGTTAGTGATTCTATGGTTGCAAACAGCCTCTATCTGCAGAATGGAAGTTGTGCATCATCATCAGGTGCACCAGTGAAATCAGAGCAACCTGACTCTTAA 3045 0.4194 MSPPAESNMREDGKPENATDQVVSRFVEFLKNELALEEKSCKEAIDLLGETKHILLTNFSSMGNGTAEEAERYWFAFISYSVKKLIHNNEEAGKEENAITGLSLCRILRAAKLNIADFFKELPQFVVKAGPTLSNLYGTDWENKLEAKEIHANAIHLKILSKYYKRVFGEFFVTTDSNAERNSSVIVHASEYHRFGWLLFLALRVHAFSRFKDLVTCTNGLISILAILIIHVPTRFRNFNIHDSSRFVKKNNKGVDLLASLCNIYNTTEDELRKTMEKANNVIADILKKKPCLASECETENLENIDKDGLTYFKDLMEESSLPSSLNLLEKDYDYMIRTKSELDERLFINEDDSLLASGSLSGGSVSAGGVKRKFDSLASPVKTITSPLSPHRSPSSHPNGIPGSGNSKMAATPVSTAMTTAKWLRTVISPLAPKPSPELERFLTSCDRDVTSDVVRRAQIILQATFPSSPLGELCVTGSLQSANLMDNIWAEQRRLEALKLYYRVLEAMCRAEAQVFHATNLTPLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNSLAVARPALSAEINRLGLLAEPMPSLDEIAMQINFSCGGLPPVPTLPKLESSPTQNGDIRSPKRNVLMERNSLTSPVKDRLLPFSNLKSKLPPPPLQSAFSSPTKPNPAGGGETCAETGINIFFGKIIKLGAVRISGMVERLQLSQQIRENVYCLFQRILNQRTSLFFNHHIDQIILCCFYGVAKISQLNLTFREIVYNYRKQPHCKPQVFRSVFVDWSLARRNGRTGQEHVDIITFYNEIFIPSVKPLLVELDPSGATTKSDRIPEVNNKNDGHLAQCPGSPKISSFPTLPDMSPKKVSATHNVYVSPLRSSKMDALISHSSKSYYACVGESTHAYQSPSKDLTAINNRLNGNRKVRGPLNFDDVDVGLVSDSMVANSLYLQNGSCASSSGAPVKSEQPDS* 1015
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g02617 1014 FunFam Retinoblastoma-related protein 1 683 895 - -
Phac11g02617 1014 SUPERFAMILY Cyclin-like 730 869 IPR036915 -
Phac11g02617 1014 Gene3D - 192 350 - -
Phac11g02617 1014 MobiDBLite consensus disorder prediction 384 413 - -
Phac11g02617 1014 Gene3D - 416 604 - -
Phac11g02617 1014 Pfam Retinoblastoma-associated protein B domain 732 859 IPR002719 GO:0005634|GO:0051726
Phac11g02617 1014 FunFam Retinoblastoma-related protein 1 192 350 - -
Phac11g02617 1014 Pfam Retinoblastoma-associated protein A domain 413 614 IPR002720 GO:0005634|GO:0051726
Phac11g02617 1014 Pfam Domain of unknown function (DUF3452) 101 231 IPR024599 -
Phac11g02617 1014 Coils Coil 27 47 - -
Phac11g02617 1014 Coils Coil 269 289 - -
Phac11g02617 1014 Gene3D - 696 882 - -
Phac11g02617 1014 SMART DUF3452_2 83 231 IPR024599 -
Phac11g02617 1014 MobiDBLite consensus disorder prediction 701 723 - -
Phac11g02617 1014 SUPERFAMILY Cyclin-like 421 616 IPR036915 -
Phac11g02617 1014 PANTHER RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED 20 1012 IPR028309 GO:0006357|GO:0051726
Phac11g02617 1014 SMART RB_A_2 413 614 IPR002720 GO:0005634|GO:0051726
Phac11g02617 1014 FunFam Retinoblastoma-related protein 1 416 604 - -
Phac11g02617 1014 CDD CYCLIN_AtRBR_like 732 863 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g02617 Phac-Chr11 36923512 36931698 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac11g02617 1 1014 Core Cell Cycle Gene Families AT3G12280 68.895 0.0 1397
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR RB Phac11g02617 RB_A 5.2e-64 CL0065
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g02617 K04681 - gmx:100779266 1833.15