LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phac11g02530	ATGGGAAAAACACTACTGAATGTGAGATCACTATGTTTTTTTGTTGTCATGTTGTTGCTAAGCTTGAAATCACTAGTTACCAAAGCACAACCACCCTTTTATTTGGGAGATGACTGTGATTTGACCCCCCAAAAGCCTCTCAGCAATGCATACAAAACCAACATTAACAACATCCTCTCATGGCTATCCTCAGATGCAGCCACAAGCAAAGGCTATAACTACAAAACCATAGGCAACAACACCCCTGTCTATGCCCTCTATGACTGCCGTGGTGATGTGGTTGGCTACTTCTGCCAATTCTGTGTCTCCTCTGCTTCAAGAACACTCCTTCAGCACTGCCCTAATAGGTTCTCTGCTGTCATGTACTACAACTTCTGCATTCTGAGGTACTCTAATGAGAACTTCATTGGGAATATTACAATAAACCATCCAAGGCATCATGTTGGGAACAAAAGTGTGTCTGGTGTAGAAGAGATTCAAAAGGGTGAGGATTTCATGAGAAGTTTGATCAGAAAAGCAACTGTGGAGACCAACCAGTTGTACTACATGGATGGCTTCAATTTGAGCTCCACTCAGAGAAGGTATGGCTTGGTGCAGTGCACCAGAGACCTCACCAGTGAGAAGTGCAGACAGTGCTTGGAGGCCATGCTAGCACAAGTTCCCCAATGTTGTCAACATAACTTGGGGTGGCTCGTAGGAACTGCAAGTTGTCACATAAAGTATGATGATTATATGTTCTACCTTTTCAACAATCAATCATATATTTTGCCCAGTTTAACAGCTAAACAAGGGGATGCAAGTAAGTCAAGAAACTTGATCATTGGATTGAGTGTGGTGGGGTTAGCAGCTCTGTGTTTGAGTGTATATTGCTTATGTTACTGGAATAGAGTTAGAAAAGATGGGCTCATAAATGATACTATTCCTCTATCTGCATATACAAATTTGCCTATAATCCCATTAACCACAATTCTTGAGAGTACTGATAACTTCTCAGAAACATCTAAGTTGGGTGAAGGTGGATTTGGCCCAGTTTACAAGGGAATTCTACCGGATGGAAGAGAAGTTGCAGTGAAAAGGCTCTCAAAAGCTTCTAATCAAGGCTCAGAGGAGTTTAAGAATGAAGTAACATTTATAGCTAAATTGCAACATAGCAACCTTGTAAGACTTGTGGCATGCTGCTTGGAGGAAAATGAAAAGATACTTGTATATGAGTATTTGTCAAATGCAAGTCTTGATTTTCACCTATTTGATGATGAAAAAAGGAAGCAACTTGATTGGAAACTAAGGTCAAGCATTATCAATGGAATAGCAAGAGGTCTTTTATATCTTCATGAAGACTCTAGACTCAAGGTAATCCACAGAGATCTCAAAGCTAGCAATGTTCTGTTAGATGATGAAATGAATCCAAAAATATCAGATTTTGGATTGGCAAGAGCATTTGAAAATGGTCAGAACCAGGCAAATACAAACCGAATAATGGGAACTTATGGCTACATGGCTCCAGAGTATGCCATGGAAGGATTGTTCTCAATGAAATCTGATGTTTTCAGCTTTGGAGTACTTGTTCTTGAAATCATTTGTGGGAAAAAGAACAGTGGATTTTTTCTATCAGAACATGGTCAAAGTCTTCTTTTATATAGTTGGAGAATGTGGTGTGCAGGAAAATGTTTGGAATTGATGGATCCATTGTTAGAAAATTCCTACACATCCAATGAAGTTGAGAAGTTTATACAGATTGGTTTATTGTGTGTTGAAGAAGCAGCAACAACTAGACCAACCATGTCCACTGTCATGGTATTGTTGGCAAGTGATGTGATGACCATTCCAAAACCCAATAAACCTGCATTCTCAGTTGGAAGAGTGGAAATGTCTGCTTCAAAAAGTTCCAAAAATATTTCCATTAATGATGTATCAATCTCTAGTATTGTACCAAGGTAA	1938	0.3932	MGKTLLNVRSLCFFVVMLLLSLKSLVTKAQPPFYLGDDCDLTPQKPLSNAYKTNINNILSWLSSDAATSKGYNYKTIGNNTPVYALYDCRGDVVGYFCQFCVSSASRTLLQHCPNRFSAVMYYNFCILRYSNENFIGNITINHPRHHVGNKSVSGVEEIQKGEDFMRSLIRKATVETNQLYYMDGFNLSSTQRRYGLVQCTRDLTSEKCRQCLEAMLAQVPQCCQHNLGWLVGTASCHIKYDDYMFYLFNNQSYILPSLTAKQGDASKSRNLIIGLSVVGLAALCLSVYCLCYWNRVRKDGLINDTIPLSAYTNLPIIPLTTILESTDNFSETSKLGEGGFGPVYKGILPDGREVAVKRLSKASNQGSEEFKNEVTFIAKLQHSNLVRLVACCLEENEKILVYEYLSNASLDFHLFDDEKRKQLDWKLRSSIINGIARGLLYLHEDSRLKVIHRDLKASNVLLDDEMNPKISDFGLARAFENGQNQANTNRIMGTYGYMAPEYAMEGLFSMKSDVFSFGVLVLEIICGKKNSGFFLSEHGQSLLLYSWRMWCAGKCLELMDPLLENSYTSNEVEKFIQIGLLCVEEAATTRPTMSTVMVLLASDVMTIPKPNKPAFSVGRVEMSASKSSKNISINDVSISSIVPR*	646

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phac11g02530	645	ProSiteProfiles	Gnk2-homologous domain profile.	139	246	IPR002902	-
	Phac11g02530	645	Pfam	Protein tyrosine and serine/threonine kinase	333	598	IPR001245	GO:0004672\|GO:0006468
	Phac11g02530	645	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase	302	405	-	-
	Phac11g02530	645	Gene3D	Phosphorylase Kinase; domain 1	302	405	-	-
	Phac11g02530	645	ProSiteProfiles	Gnk2-homologous domain profile.	32	135	IPR002902	-
	Phac11g02530	645	SMART	serkin_6	330	606	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Phac11g02530	645	FunFam	Cysteine-rich receptor-like protein kinase 10	145	246	-	-
	Phac11g02530	645	Gene3D	Transferase(Phosphotransferase) domain 1	406	608	-	-
	Phac11g02530	645	FunFam	Liguleless narrow1	406	609	-	-
	Phac11g02530	645	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	48	641	-	-
	Phac11g02530	645	Gene3D	-	39	135	IPR038408	-
	Phac11g02530	645	Gene3D	-	152	246	IPR038408	-
	Phac11g02530	645	ProSiteProfiles	Protein kinase domain profile.	330	606	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Phac11g02530	645	FunFam	Cysteine-rich receptor-like protein kinase 28	35	134	-	-
	Phac11g02530	645	CDD	STKc_IRAK	336	597	-	-
	Phac11g02530	645	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	451	463	IPR008271	GO:0004672\|GO:0006468
	Phac11g02530	645	SUPERFAMILY	Protein kinase-like (PK-like)	314	627	IPR011009	-
	Phac11g02530	645	Pfam	Salt stress response/antifungal	47	132	IPR002902	-
	Phac11g02530	645	Pfam	Salt stress response/antifungal	164	244	IPR002902	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phac11g02530	Phac-Chr11	36128503	36131653	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Phac11g02530	10	645	Receptor kinase-like Gene Family	AT4G05200	39.673	5.06e-161	477

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Phac11g02530		PK_Tyr_Ser-Thr	5.7e-48	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Phac11g02530	-		-	vum:124821055	1172.92