Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g02398 ATGCCATTTTGCCGTGGCCAAAAGTTTTTCAAGAGGTTCTGCGTTGATGAGTTCCAAATGGCAAGTCTTCCATATAGCAGCTTTCTGTCTAATGATCTCTTGCCATCCCTTGGAGCCAGAATCAACCAAGAAACAAGGCTTAGAAGATGCACAGTTTCCCCTTTCGATCCACGTTACAGGGCATGGGAGATGCTACTTATTGTCCTTGTTGTTTACTCTGCATGGATTTGCCCCTTTGAGTTTGCCTTTCTCCCTGAAAACCAAGGCACACTGTTCATCATAGACAACATTGTCAATGCCTTCTTTGCAATTGACATCGTTCTCACATTCTTTGTTGCATATCTTGATAACCATTCCTACCTTCTTGTTGATGAACCAAAGAAAATTGCATTAAGGTACATATCTACCTGGTTTGTCTTTGATATCTGTTCAACTGCACCATTTCAATCCATCAGCCTCCTATTCACTGATCACAGCAGTGAAATTGGGTTCAAAATTCTGAACATGCTTCGGTTGTGGCGCCTGAGACGTGTCAGTTCTCTGTTTGCAAGACTTGAGAAGGACATTCGCTTCAATTACTTCTGGACCAGGTGCTCCAAGCTCATTGCTGTGACATTGTTTGTTGTGCACTGTGCTGGATGCTTCAACTATCTGATTGCAGATAGGTACCCAGATGCGAAATCAACATGGATTGGTTCTGTGTATCCAAATTTCAAAGAAATGAGTCTCTGGGACAGATATGTTACTGCCATTTATTGGTCCATTGTGACTCTTACTACCACTGGCTATGGAGATTTGCATGCTGAAAACCCAAGGGAGATGCTCTTTTTCATCTTCTACATGTTGTTCAACTTGGGATTAACTTCATACATCATTGGAAACATGACAAACATAGTGGTTCATTGGACAAGTCGCACCAGAAATTTTAGGGACACAGTGAGAGCAGCTTCAGAATTTGCATCAAGAAACCATCTGCCACATCACATACAGGAACAGATGTTGTCACACTTGTGTTTGAAGTTCAAGACAGAAGGACTGAAGCAGCAAGAGACACTGAATGGCATGCCAAAGGGAATTCGTGCAAGCATTGCACACCAACTGTTTTTCCCTGTTCTGCAGAGGCTCTACCTCTTCCAAGGAGTTTCAGATGATTTTCTCTTCCAACTGGTTACAGAGATGGAAGCTGAGTATTTCCCACCAAAGGAAGATGTGATACTACAAAATGAGTCTCCCACAGACCTCTACATACTGGTTTCAGGAGCAGTGGATCTCATTCGCTGTGTTGATGGCAATGAACAAGTTCTGAAGAAGGTTAAGGCAGAGGATACATTTGGAGAGATTGGAGTGTTGTACTGTAGACCACAGCCTTTCGCTGTTCGGACCACTGAGCTTTCTCAAATTTTAAGACTCAGCAGAACTTCCTTAATGAACTACTTACATGCATATCCACAAGCTGCACAGATCATAATGAAAAACATCTTCATGAGGTTAAAGGGGCATGAAGGCTTGGATTTTGAATATTCTCCAAGAGACCCCCAAATGCATCAAGAGATGGATAACACAGGAGGAAGTTTTCCTGATTCATCTACAAATAATTCTGATGGGGAAACCAGATTGCATAACTTGGTTCCTGAGGATGGAAAAGGAAATCTTCATGCTAATTTTCACAAAGATCATCCTGAAATGGAAGAAAATGAAAAGAACCAAGGCCCTATAAGATGGAAACAGAAGTCTCTTGTAGATCAGCAACAAAACAAGAGCCTTTCTGAGCTTGCAAATAACCATGAAAATAGGAAGATATTAGATGAACATATCATAGATTTTTTGGAGCCAGAAATCCCTTTCAACTACCCTTTAGGAAAAATATACTCAACCCCTTATTCAAGTACTTCTAGCCACAGAACTCAGAGAGAAACAGAAAGATTCTTCAAAAAGAGAGTCACCATCCACTGTCTAAGCAAACACAAAACTACCTTACAGGAACATGGAAAGTTGATAATCCTACCTGATTCATTAGAAGAGCTGCTCCATATTGCTGGTAAACATTGA 2049 0.4119 MPFCRGQKFFKRFCVDEFQMASLPYSSFLSNDLLPSLGARINQETRLRRCTVSPFDPRYRAWEMLLIVLVVYSAWICPFEFAFLPENQGTLFIIDNIVNAFFAIDIVLTFFVAYLDNHSYLLVDEPKKIALRYISTWFVFDICSTAPFQSISLLFTDHSSEIGFKILNMLRLWRLRRVSSLFARLEKDIRFNYFWTRCSKLIAVTLFVVHCAGCFNYLIADRYPDAKSTWIGSVYPNFKEMSLWDRYVTAIYWSIVTLTTTGYGDLHAENPREMLFFIFYMLFNLGLTSYIIGNMTNIVVHWTSRTRNFRDTVRAASEFASRNHLPHHIQEQMLSHLCLKFKTEGLKQQETLNGMPKGIRASIAHQLFFPVLQRLYLFQGVSDDFLFQLVTEMEAEYFPPKEDVILQNESPTDLYILVSGAVDLIRCVDGNEQVLKKVKAEDTFGEIGVLYCRPQPFAVRTTELSQILRLSRTSLMNYLHAYPQAAQIIMKNIFMRLKGHEGLDFEYSPRDPQMHQEMDNTGGSFPDSSTNNSDGETRLHNLVPEDGKGNLHANFHKDHPEMEENEKNQGPIRWKQKSLVDQQQNKSLSELANNHENRKILDEHIIDFLEPEIPFNYPLGKIYSTPYSSTSSHRTQRETERFFKKRVTIHCLSKHKTTLQEHGKLIILPDSLEELLHIAGKH* 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g02398 682 PRINTS EAG/ELK/ERG potassium channel family signature 273 284 IPR003938 GO:0005249|GO:0006813|GO:0016020
Phac11g02398 682 PRINTS EAG/ELK/ERG potassium channel family signature 106 115 IPR003938 GO:0005249|GO:0006813|GO:0016020
Phac11g02398 682 PRINTS EAG/ELK/ERG potassium channel family signature 247 264 IPR003938 GO:0005249|GO:0006813|GO:0016020
Phac11g02398 682 PRINTS EAG/ELK/ERG potassium channel family signature 95 105 IPR003938 GO:0005249|GO:0006813|GO:0016020
Phac11g02398 682 PRINTS EAG/ELK/ERG potassium channel family signature 291 300 IPR003938 GO:0005249|GO:0006813|GO:0016020
Phac11g02398 682 PRINTS EAG/ELK/ERG potassium channel family signature 72 79 IPR003938 GO:0005249|GO:0006813|GO:0016020
Phac11g02398 682 FunFam Potassium channel KAT2 365 501 - -
Phac11g02398 682 SMART cnmp_10 377 494 IPR000595 -
Phac11g02398 682 SUPERFAMILY Voltage-gated potassium channels 54 299 - -
Phac11g02398 682 ProSiteProfiles cAMP/cGMP binding motif profile. 377 496 IPR000595 -
Phac11g02398 682 Pfam Ion transport protein 60 306 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Phac11g02398 682 SUPERFAMILY cAMP-binding domain-like 304 497 IPR018490 -
Phac11g02398 682 Pfam KHA, dimerisation domain of potassium ion channel 645 681 IPR021789 -
Phac11g02398 682 Pfam Cyclic nucleotide-binding domain 397 480 IPR000595 -
Phac11g02398 682 CDD CAP_ED 377 490 IPR000595 -
Phac11g02398 682 MobiDBLite consensus disorder prediction 561 584 - -
Phac11g02398 682 ProSiteProfiles KHA domain profile. 646 682 IPR021789 -
Phac11g02398 682 MobiDBLite consensus disorder prediction 514 536 - -
Phac11g02398 682 FunFam Potassium channel KAT3 61 301 - -
Phac11g02398 682 Gene3D - 60 301 - -
Phac11g02398 682 MobiDBLite consensus disorder prediction 511 536 - -
Phac11g02398 682 Gene3D Jelly Rolls 344 508 IPR014710 -
Phac11g02398 682 PANTHER POTASSIUM CHANNEL AKT1 26 500 IPR045319 GO:0005249|GO:0006813
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g02398 Phac-Chr11 35054543 35062045 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac11g02398 1 681 Ion Channels AT5G46240 59.649 0.0 826
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g02398 K21867 - gmx:100800340 1191.41