Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g02386 ATGGAAAACCACATCTACTCCTCCTACAGCCCTTCCACCAACTACCGATTCCGCGACCCCGACCCCTCCACCATGTTCCTCTCCCACCACCACCACCGCGCCGCCGACTCCGCCTCCCTCCGCTTCTCCTCCTCCCTCGCCGACGACATTGCCCCGCCTGGCGTCACCTCCCGCGTCGCCTCCTCCGCTGCCGCCAACTACCTCTCCCCCTGGGCCTCCTCCGCCGCCACCTCCTCCCTCGACTTCAAACGCTCCTCCGAAGCTCTCTACCATCCAACCATTTTGGGTACAATTGGGCAAAGTGAAGCTTGGTATTCTACAAACTCACTGGCCAAGCGCCCTAGATATGAAAGTGCTTCCAATATGACTATATATCCACAGAGGCCAGGAGAGAAAGATTGTGCCCACTATATGCTCACAAGAACCTGTAAGTTTGGAGATAGCTGCAAGTTTGACCATCCTGTTTGGGTTCCTGAGGGTGGAATCCCGGATTGGAAAGAGGTTCCAAATGTTGTTACAAGTGAAACTCCTCCTGAGAGACCAGGGGAACCAGATTGTCCATACTTTCTGAAAACTCAGAGATGCAAGTTTGGTTCGAAGTGCAAATTTAATCATCCTATGGTTTCCTCTGAAAATGATGATATATCTTCTGGCTTACCTGAGAGGCCATCAGAGCCCCCTTGCACGTTCTACATGAAAACTGGAAAATGTAAATTTGGTGCTGCTTGCAAATTCCATCACCCCAAGGATATCCAGATTCAGTTGTCTGATGAGTTGAGTCATACTGCTGCGCAGACAGAGACAAGTTCTATGATAGGAGGGGCATTTGGAGATATACAGCCAATTAAGTCTCTTATATCTCCATCATTGCAAAATAGCAAAGGACTTCCAGTAAGATTGGGGGAAGTGGATTGTCCATTCTACATGAAAACGGGCAGTTGCAAGTATGGTGCCACTTGCCGCTACAATCATCCTGACAGGAACGCAATTAATCCTCCCATTGCTGGATTAGGCGCTTCTATTTTGCCATCCTCAGCTGCTAGTCTGAATATTGGACTTCTTAGTCCAGCTGTGTCTGTCTATCAAGCTTTTGACCCAAGGCTGTCAAATCCAATGTCTCAGGTGGGAATTGCAGAAAGTATCTATCCTCAGCGACCTGGCCAGATTGAATGTGATTTTTACATGAAAACTGGCGAGTGTAAATTTGGGGAAAGATGCAAGTATCATCACCCAATTGATCGCTCAGCACCATCACTGTCAAAGCAGGCTTCTGTCAAGCTCACTCCTGCAGGATTACCTAGAAGAGAGGGTGCTGTTATTTGTCCATATTATTTGAAAACTGGAACATGCAAGTTTGGTGCAACCTGCAAGTTTGACCACCCACCACCTGGAGAAGTTGTGGAGATGGCAAAATCACAAGGAACATCAGCCGATGGAGGGGAAGCAGAAGACTGA 1455 0.4859 MENHIYSSYSPSTNYRFRDPDPSTMFLSHHHHRAADSASLRFSSSLADDIAPPGVTSRVASSAAANYLSPWASSAATSSLDFKRSSEALYHPTILGTIGQSEAWYSTNSLAKRPRYESASNMTIYPQRPGEKDCAHYMLTRTCKFGDSCKFDHPVWVPEGGIPDWKEVPNVVTSETPPERPGEPDCPYFLKTQRCKFGSKCKFNHPMVSSENDDISSGLPERPSEPPCTFYMKTGKCKFGAACKFHHPKDIQIQLSDELSHTAAQTETSSMIGGAFGDIQPIKSLISPSLQNSKGLPVRLGEVDCPFYMKTGSCKYGATCRYNHPDRNAINPPIAGLGASILPSSAASLNIGLLSPAVSVYQAFDPRLSNPMSQVGIAESIYPQRPGQIECDFYMKTGECKFGERCKYHHPIDRSAPSLSKQASVKLTPAGLPRREGAVICPYYLKTGTCKFGATCKFDHPPPGEVVEMAKSQGTSADGGEAED* 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g02386 484 Gene3D - 383 477 - -
Phac11g02386 484 Gene3D - 217 334 - -
Phac11g02386 484 SUPERFAMILY CCCH zinc finger 226 250 IPR036855 GO:0046872
Phac11g02386 484 FunFam Zinc finger CCCH domain-containing protein 37 87 165 - -
Phac11g02386 484 ProSiteProfiles Zinc finger C3H1-type profile. 299 327 IPR000571 GO:0046872
Phac11g02386 484 SMART c3hfinal6 128 155 IPR000571 GO:0046872
Phac11g02386 484 SMART c3hfinal6 299 326 IPR000571 GO:0046872
Phac11g02386 484 SMART c3hfinal6 180 207 IPR000571 GO:0046872
Phac11g02386 484 SMART c3hfinal6 435 462 IPR000571 GO:0046872
Phac11g02386 484 SMART c3hfinal6 385 412 IPR000571 GO:0046872
Phac11g02386 484 SMART c3hfinal6 222 249 IPR000571 GO:0046872
Phac11g02386 484 SUPERFAMILY CCCH zinc finger 185 207 IPR036855 GO:0046872
Phac11g02386 484 ProSiteProfiles Zinc finger C3H1-type profile. 222 250 IPR000571 GO:0046872
Phac11g02386 484 SUPERFAMILY CCCH zinc finger 388 413 IPR036855 GO:0046872
Phac11g02386 484 SUPERFAMILY CCCH zinc finger 439 462 IPR036855 GO:0046872
Phac11g02386 484 FunFam Zinc finger CCCH domain-containing protein 37 166 213 - -
Phac11g02386 484 ProSiteProfiles Zinc finger C3H1-type profile. 128 156 IPR000571 GO:0046872
Phac11g02386 484 ProSiteProfiles Zinc finger C3H1-type profile. 435 463 IPR000571 GO:0046872
Phac11g02386 484 Gene3D - 85 165 - -
Phac11g02386 484 Gene3D - 166 216 - -
Phac11g02386 484 PANTHER PROTEIN PHOSPHATASE RELATED 288 471 - -
Phac11g02386 484 FunFam zinc finger CCCH domain-containing protein 37 383 476 - -
Phac11g02386 484 ProSiteProfiles Zinc finger C3H1-type profile. 385 413 IPR000571 GO:0046872
Phac11g02386 484 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 182 207 IPR000571 GO:0046872
Phac11g02386 484 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 439 462 IPR000571 GO:0046872
Phac11g02386 484 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 388 411 IPR000571 GO:0046872
Phac11g02386 484 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 130 154 IPR000571 GO:0046872
Phac11g02386 484 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 225 249 IPR000571 GO:0046872
Phac11g02386 484 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 302 325 IPR000571 GO:0046872
Phac11g02386 484 ProSiteProfiles Zinc finger C3H1-type profile. 180 208 IPR000571 GO:0046872
Phac11g02386 484 SUPERFAMILY CCCH zinc finger 303 326 IPR036855 GO:0046872
Phac11g02386 484 SUPERFAMILY CCCH zinc finger 128 155 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g02386 Phac-Chr11 34908275 34920149 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac11g02386 284 477 C2H2 Transcription Factor Family AT3G02830 34.359 9.14e-29 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Phac11g02386 zf-CCCH 1.5e-10 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g02386 - - pvu:PHAVU_011G180700g 1005.36