Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g02377 ATGACGCAACCATCCGCGCCTCCGCCTCCTCCTCCTCCGCCGCTCGCGCCACCGCCACCGACAACTCCGCCGCCTCCTCAGCAGACCGAGAGCGTCCGCGTCCGCTGTGCCGGCTGCCGCATGATCCTCACAGTGGCGCCCGGCCTCACGGAGTTCGCCTGCCCTACCTGCCGAATGCCGCAGATGCTTCCGCCGGAGCTCATGCCTAGGGACCGTGCCGCCGCCGCAAATGCGCCAACAACGGTGCCTCCGACGTCCGCTCCGCCCTCGCAGCCTCCGCACGCGCCTGCACACGGCATTGATCCCACTAAGATCCAGCTTCCCTGCGCTTCTTGTAAGGCCATCCTCAACGTCCCTCACGGCCTCGCGCGCTTCGCTTGCCCTCAGTGCAACGTTGACCTAGCCGTCGATGTCTCCAAGGTCAAGCAGTTCTTCCCCGCCGCTCCTCCGCTGGAAGAAGTTAACGAGGTTGCTGTTGAAGTGGAGCGGGATGAGGATGAAGGTGGCATGGTTGGAGAAACATTTACAGATTATCGGCCACCAAAAGTATCTATTGGACCTCCACACCCAGATCCTGTTGTGGAGACATCTTCCTTGTCTGCAGTGCAGCCACCTGAGCCAATTTATGATCCAAAAATTAAAGATGATTTGGAGAGTTCAAAGACTTTGTCTTGCTTGCAAATTGAGACATTGGTCTATGCTTGTCAGAGACACCTTCAACATCTCCCAAATGGAGCTAGGGCAGGATTCTTTATTGGAGATGGAGCTGGTGTTGGTAAAGGTCGAACAATTGCAGGATTAATTTGGGAGAACTGGCATCATGGAAGGAGGAAAGCTTTGTGGATTTCTGTTGGTTCAGACTTGAAGTTTGATGCTAGAAGGGACTTGGATGATGTGGGTGCAACATGCGTTGAAGTGCATGCTTTGAACAAACTGCCTTATTCTAAGCTTGATTCAAAGTCTGTTGGGATCAGGGAGGGAGTTGTTTTCTTGACGTACAATAGTCTCATAGCATCTTCTGAGAAAGGTCGTACTCGTCTCCAGCAGCTTGTACAGTGGTGTGGACCAGGGTTTGATGGTCTTATAATTTTTGATGAGTGTCATAAAGCAAAAAATTTGGTCCCTGAAGCTGGTAGTCAGCCAACACGAACTGGAGAGGCAGTGCTTGATATCCAGGACCGACTGCCTGAAGGTCGTGTTGTTTATTGCTCAGCAACTGGGGCATCTGAGCCTCGCAATCTGGGTTATATGGTTCGACTTGGTCTTTGGGGAGATGGGACGTCATTCTTAGATTTCCGCGAATTTCTAGGTGCTCTGGACAGAGGAGGTGTTGGAGCTCTTGAATTAGTTGCCATGGACATGAAAGCAAGGGGTATGTATTTATGCCGGACGCTTAGCTATGAAGGTGCAGAGTTTGAAGTTATTGAAGCACCATTAGAAGAGAAAATGATGGAAATATATAAAAAGGCAGCAGAATTTTGGGCTGAATTACGAGTTGAATTGCTGTCAGCCAGTGCCTTCCTAAATGATAAACCTAATTCTAGTCAACTGTGGCGCTTATACTGGGCAAGCCATCAGCGTTTCTTTAGACACCTATGTATGTCTGCTAAAGTCCCTGCTGCTCTGAGACTAGCGAAGCAAGCATTAGTTCAAGAAAAATGTGTAGTCATTGGTCTTCAGAGTACTGGAGAAGCAAGGACAGAGGAAGCTGTGACAAAATATGGTTCTGAACTTGATGACTTTGTTTCTGGACCTCGAGAATTGCTGCTTAAATTTGTGGAAGAAAATTACCCTTTACCAGAGAAACCTGAACTTCTCCCAGGAGAAGATGGGGTGAAAGAACTCCAAAGGAAGAGGCACTCTGCAACTCCTGGTGTTTCAGTAAAAGGCAGGGTCAGAAAAGTGGCCAAGTGGCAACCTCCTAGTGATGCTGAAAGTGACGAAGAATCTGAAACTGACTCTGGTGTTGAATCTACTGATTCTGATGATGAGTTTCAAATATGTGAAATTTGTACTACTGAGGAGGAAAAGAAAAAAATGCTACAGTGTTCTTGCTGCGGTAAATTAGTCCATTCCACATGCTTGATGCCACCAATTGGTGATGTAGTTCCTGAAGAGTGGTCATGCCATTTGTGTAAGGAAAAAACAGATGAATATCTTCAAGCAAGACAGGCCTACATAGCTGAACTTCAAAAGAGGTATGATGCAGCCTTGGAACGCAAGACAAAAATATCAGAGATAATTCGGTCTTTGGATCTTCCAAATAATCCTTTGGACGATATTGTTGACCAGCTAGGAGGCCCTGACAAAGTTGCAGAAATGACAGGAAGGAGAGGCATGCTTGTGAGGGCTGCTACGGGCAAGGGTGTAACTTATCAGGCTCGTAACACAAAAGATGTCACCATGGAAATGGTTAACATGCATGAAAAGCAGCTCTTTATGGATGGTAAAAAGTTAGTTGCTATTATCTCTGAGGCAGGATCTGCTGGTGTTTCATTGCAGGCAGATAGACGAGCTGCTAACCAGAAAAGAAGGGTTCATTTAACCCTGGAACTTCCATGGAGTGCTGACCGGGCAATTCAACAGTTTGGAAGAACTCATCGATCAAATCAGGCTTCTGCACCAGAATACAGGCTAGATATTTAA 2646 0.4777 MTQPSAPPPPPPPPLAPPPPTTPPPPQQTESVRVRCAGCRMILTVAPGLTEFACPTCRMPQMLPPELMPRDRAAAANAPTTVPPTSAPPSQPPHAPAHGIDPTKIQLPCASCKAILNVPHGLARFACPQCNVDLAVDVSKVKQFFPAAPPLEEVNEVAVEVERDEDEGGMVGETFTDYRPPKVSIGPPHPDPVVETSSLSAVQPPEPIYDPKIKDDLESSKTLSCLQIETLVYACQRHLQHLPNGARAGFFIGDGAGVGKGRTIAGLIWENWHHGRRKALWISVGSDLKFDARRDLDDVGATCVEVHALNKLPYSKLDSKSVGIREGVVFLTYNSLIASSEKGRTRLQQLVQWCGPGFDGLIIFDECHKAKNLVPEAGSQPTRTGEAVLDIQDRLPEGRVVYCSATGASEPRNLGYMVRLGLWGDGTSFLDFREFLGALDRGGVGALELVAMDMKARGMYLCRTLSYEGAEFEVIEAPLEEKMMEIYKKAAEFWAELRVELLSASAFLNDKPNSSQLWRLYWASHQRFFRHLCMSAKVPAALRLAKQALVQEKCVVIGLQSTGEARTEEAVTKYGSELDDFVSGPRELLLKFVEENYPLPEKPELLPGEDGVKELQRKRHSATPGVSVKGRVRKVAKWQPPSDAESDEESETDSGVESTDSDDEFQICEICTTEEEKKKMLQCSCCGKLVHSTCLMPPIGDVVPEEWSCHLCKEKTDEYLQARQAYIAELQKRYDAALERKTKISEIIRSLDLPNNPLDDIVDQLGGPDKVAEMTGRRGMLVRAATGKGVTYQARNTKDVTMEMVNMHEKQLFMDGKKLVAIISEAGSAGVSLQADRRAANQKRRVHLTLELPWSADRAIQQFGRTHRSNQASAPEYRLDI* 882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g02377 881 Pfam PHD-finger 667 715 IPR019787 -
Phac11g02377 881 SUPERFAMILY FYVE/PHD zinc finger 658 718 IPR011011 -
Phac11g02377 881 MobiDBLite consensus disorder prediction 614 661 - -
Phac11g02377 881 SMART PHD_3 667 713 IPR001965 -
Phac11g02377 881 MobiDBLite consensus disorder prediction 1 27 - -
Phac11g02377 881 MobiDBLite consensus disorder prediction 74 100 - -
Phac11g02377 881 ProSitePatterns Zinc finger PHD-type signature. 668 712 IPR019786 -
Phac11g02377 881 MobiDBLite consensus disorder prediction 82 96 - -
Phac11g02377 881 ProSiteProfiles Zinc finger PHD-type profile. 665 715 IPR019787 -
Phac11g02377 881 Pfam P-loop containing NTP hydrolase pore-1 188 488 IPR039187 -
Phac11g02377 881 MobiDBLite consensus disorder prediction 1 31 - -
Phac11g02377 881 Coils Coil 727 747 - -
Phac11g02377 881 PANTHER STRAWBERRY NOTCH-RELATED 27 879 IPR026741 GO:0006355
Phac11g02377 881 Pfam C-terminal domain on Strawberry notch homologue 756 879 IPR026937 -
Phac11g02377 881 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 651 737 IPR013083 -
Phac11g02377 881 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 195 431 IPR027417 -
Phac11g02377 881 MobiDBLite consensus disorder prediction 645 661 - -
Phac11g02377 881 FunFam Protein strawberry notch homolog 2 219 419 - -
Phac11g02377 881 Gene3D - 215 417 IPR027417 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Phac11g02377 AAA_34 1.5e-131 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g02377 K26273 - gmx:100808670 1539.24