Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Phac11g02352 | ATGGATTGTTCAGCTGCAAGAAAGACACAAAAGGCTGACCGAGAAAAGTTAAGGAGGGATCGACTCAATGAACAATTTGTAGAACTGGGTAACGTTTTAGACCCTGACAGGCCCAAAAATGACAAAGCAACCATTCTAGGTGATACAATTCAATTGCTGAAGGACCTTACTTCTCAAGTTAGTAAACTCAAAGAAGAATATGCTACACTAAATGAAGAATCTCGTGAGTTGACTCAGGAGAAAAATGATCTCAGAGAAGAAAAGGCTTCTCTTAAATCGGATATCGATAACTTGAATAATCAGTATCAGCAGCAGCTCAGGACTATGTTTCCATGGACTGCAATGGATCATTCAGTTGTGATGGCTCCACCATCATACCCCTTTCCAATGCCAATGGCAGTACCTCCTGGTCCAATTCCCATGCAGCCATTCCCCTACTTTGCTAATCAACATCCTGCAGTCATCTCCAATCCCCATTCAACTTTTGTTCCTTATTTAGCCCCCAATACCATTGTTGAACAACAATCCACACAGTACGTTTCGCCTCCACTTCATCCAGGCAGTCGGTCCAATGTGTCTGAAAAACAAGAGTCCAAAAGCAAATCATTCAGGGAGAGCAAGGCCGAAAAGAATGAGGATTCTAATGATGTCACTACGGACCTTCAGTTGAAGACTCCTGGGTCTTCCGGAGATCAGGATTTATCATCCGGACAAAGAAAATCTGGGAAGTTGTCGAGAAGGGAAAGCAGCTGCTGCTCGGGAGGGAATTCATTAGGTAGGTCTTCTTCTCATAGCGCTCAGGATAGCTCATCAAGCAGTACAGTTGTAAGCAGAAAGGATAATGAATGA | 849 | 0.4335 | MDCSAARKTQKADREKLRRDRLNEQFVELGNVLDPDRPKNDKATILGDTIQLLKDLTSQVSKLKEEYATLNEESRELTQEKNDLREEKASLKSDIDNLNNQYQQQLRTMFPWTAMDHSVVMAPPSYPFPMPMAVPPGPIPMQPFPYFANQHPAVISNPHSTFVPYLAPNTIVEQQSTQYVSPPLHPGSRSNVSEKQESKSKSFRESKAEKNEDSNDVTTDLQLKTPGSSGDQDLSSGQRKSGKLSRRESSCCSGGNSLGRSSSHSAQDSSSSSTVVSRKDNE* | 283 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Phac11g02352 | 282 | Gene3D | - | 5 | 89 | IPR036638 | GO:0046983 | |
| Phac11g02352 | 282 | MobiDBLite | consensus disorder prediction | 192 | 217 | - | - | |
| Phac11g02352 | 282 | MobiDBLite | consensus disorder prediction | 218 | 239 | - | - | |
| Phac11g02352 | 282 | Coils | Coil | 5 | 25 | - | - | |
| Phac11g02352 | 282 | SMART | finulus | 12 | 62 | IPR011598 | GO:0046983 | |
| Phac11g02352 | 282 | MobiDBLite | consensus disorder prediction | 177 | 282 | - | - | |
| Phac11g02352 | 282 | MobiDBLite | consensus disorder prediction | 177 | 191 | - | - | |
| Phac11g02352 | 282 | MobiDBLite | consensus disorder prediction | 247 | 282 | - | - | |
| Phac11g02352 | 282 | Pfam | Helix-loop-helix DNA-binding domain | 7 | 56 | IPR011598 | GO:0046983 | |
| Phac11g02352 | 282 | PANTHER | TRANSCRIPTION FACTOR BHLH121 | 2 | 278 | IPR044579 | GO:0003700|GO:0006879 | |
| Phac11g02352 | 282 | CDD | bHLH_AtILR3_like | 11 | 85 | - | - | |
| Phac11g02352 | 282 | Coils | Coil | 46 | 108 | - | - | |
| Phac11g02352 | 282 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 5 | 76 | IPR036638 | GO:0046983 | |
| Phac11g02352 | 282 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 6 | 56 | IPR011598 | GO:0046983 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Phac11g02352 | Phac-Chr11 | 34618874 | 34624446 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Phac11g02352 | 1 | 246 | Basic Helix-Loop-Helix Transcription Factor Gene Family | AT3G19860 | 62.698 | 2.45e-94 | 279 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | bHLH | Phac11g02352 | HLH | 1e-08 | No_clan |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Phac11g02352 | - | - | gmx:100804250 | 448.358 |