LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phac11g02335	ATGAATAAGAACCCTATATTATACAACCAAAAGCTTAATTGCAGTTTAAACTTTCCTCAACTGAATCATTGTATCACTGAAATCATGGCTTGCAGTGCAGAAAGAAAAACTCATGTGTTGCCACTTCTGACCTACTTCTTGTTGTGGTGGTGGTGTGTTCATGTTGAAGCCACCAACAATACTTTGAAGCCAGGTGATACGTTGAATGCAACAGAAGGGGCCGAACTATGTTCAGAAAAGGGTAACTACTGCATGAAGTTTAACCCAACATTTGATGATGTGAGTGAAGCTATCTTATATATATATGATCAAAAGGATCTTTGGGCTGTGTGGATTGCTAATAGAGACCAACCTGTTGACATAGATTCTGCAGTTCTATCATTGAATCATTCTGGGGTACTCAAAATAGAATCTCAACATGGAGAAATCATCCTTTTTTCACCACCTCAAGCTATCAACAACACTGTGGCTACACTGTTGGACACCGGTAGCTTTGTGCTTCAGCAACTTCACCCCAATGGGTCTGTAATGGGTGTGTTGTGGGAAACTTTTGATTTCCCCGCAGACACTTTGCTCCCAGGGATGAAGTTAGGTGTGAATCACAAAACTGGTCATAAATGGTCACTGGTTTCATTGCTGAGTAAATATGTTGCTACTCGTGGTCCATTCAGGCTTGAATGGGAGCACGAAACAAGACAGTTGAAGATCAAGAGAGGAGAAAAGCTTTACTGGGCTGCTGGTGAAAACCAGTTGAAGCACATCTTGGGGGAGGCTTATCAGCAAATTGTGTTTGTCTCAAATGAAAATGAAGCCTACATCACATTGAGGAGTTCAGAGGAAGAGCTCATAAAATGGACACTGTTGTCCACTGGTCAAGTGATAAACCGAAATGGAGGTGATGATGTTGCAAGGGCTGATCTGTGTTATGGATACAACACAGATGGAGGGTGCCAAAAGTGGGAGGATCTACCCTCTTGCAGAAATTCTGGTGATGCCTTTGAACTGAAGCACGGTTATGCCAATTTTGGCTTGGACGTGAAAAGAGATGAAGAAAATTCAAGTTATGGCATAAATGATTGCCAAGCTATTTGCTGGAGCACCTGCAACTGTGTTGGATTCACTCATCTATATGCTAATGAAACTGGTTGCACCTTCTTTCAGTGGAATTCAACCAAGGGTACCAATATTGCAAGTGAGGGTGATAAGTTTTACTTGCTGGTAAAGAGCAACCATCACAAAAGTACACAAAAATGGATATGGGGAATTGTTGCAATAGGAGCAAGTATACTCATTATCTGCCTTAGCCTTCTGTGTCATAGAGCCTTAAGGAAAAGAAAATATGCCCTTGAAGAGCTTAAAGCTAAAAGAATGGGGATTGAGAATAAGGATCTTGAAGCTTCCAATAGATCTTCTTATGCAGAAAAACTAGAAGTTTTTTTAAAGGATGAACATGACAAAGTTTTTAGTTATGCATCAATAGTGGAGGCCACAAATGACTTTTCATCTGAAAACAAGTTAGGACAAGGAGGCTTTGGACCAGTTTATAAGGGAATTCTACCTACAATGCAAGAAGTTGCTGTGAAAAAACTTTCAAAATCTTCCAGACAAGGTCTACTTGAATTTAAAAATGAATTAACAGTCATATCTAAACTGCAGCACACAAATTTGGTTCAGCTACTCGGTTACTGCATTCACGAAGACGAAAGGATTTTGGTTTATGAGTATATGCCTAACAAAAGCTTGGACTTCATTTTATTTGATTGTACACAAAATCAGTTGCTAGATTGGAATAAGCGTTTCAGTATAATAGAAGGAATTGCTCAAGGATTACTATACCTTCACAAATACTCAAGACATAGAATCATTCACAGAGACTTGAAGACTAGCAACATACTCCTTGATGAGAATATGAACCCCAAAATTTCTGATTTTGGTATAGCAAAAATGTTCACACAGCAGGATTCTGAATCAAATACCACCAGGATTGTTGGCACTTATGGTTACATGTCTCCTGAATATGCTATGGAAGGAGTTTTCTCAACAAAATCTGATGTATATAGCTTTGGAGTGTTGCTCTTTGAAATTGTTAGTGGTAAAAGAAACAATAGCTTCTACACTGATGAAAGACAACTGAATCTAGTAGGACATACATGGGAGCTATGGAAAGAAGGTGAGGTTCTTAAGTTGGTGGATCCATCACTGAATGATTCATTTTCAGAGGATGAAGTGCTAAGATGTGTGCATGCTGGTCTTTTATGTGTGGAAGAAAATGCAGATGATCGCCCCTCCATCTCTGTCATTGTATCTATGTTAGCCAACAAAAGTAAAGTTACTACTGTGCCTAAAAAACCAGCATATTATGTTAGAACAAAAGTCCTTGGGGAAGAAACATCCACCAGAGATTTTGGTTTAGATTCTACACACGAGAATTCCCTTTATGTATCTTCAATTTGA	2454	0.3904	MNKNPILYNQKLNCSLNFPQLNHCITEIMACSAERKTHVLPLLTYFLLWWWCVHVEATNNTLKPGDTLNATEGAELCSEKGNYCMKFNPTFDDVSEAILYIYDQKDLWAVWIANRDQPVDIDSAVLSLNHSGVLKIESQHGEIILFSPPQAINNTVATLLDTGSFVLQQLHPNGSVMGVLWETFDFPADTLLPGMKLGVNHKTGHKWSLVSLLSKYVATRGPFRLEWEHETRQLKIKRGEKLYWAAGENQLKHILGEAYQQIVFVSNENEAYITLRSSEEELIKWTLLSTGQVINRNGGDDVARADLCYGYNTDGGCQKWEDLPSCRNSGDAFELKHGYANFGLDVKRDEENSSYGINDCQAICWSTCNCVGFTHLYANETGCTFFQWNSTKGTNIASEGDKFYLLVKSNHHKSTQKWIWGIVAIGASILIICLSLLCHRALRKRKYALEELKAKRMGIENKDLEASNRSSYAEKLEVFLKDEHDKVFSYASIVEATNDFSSENKLGQGGFGPVYKGILPTMQEVAVKKLSKSSRQGLLEFKNELTVISKLQHTNLVQLLGYCIHEDERILVYEYMPNKSLDFILFDCTQNQLLDWNKRFSIIEGIAQGLLYLHKYSRHRIIHRDLKTSNILLDENMNPKISDFGIAKMFTQQDSESNTTRIVGTYGYMSPEYAMEGVFSTKSDVYSFGVLLFEIVSGKRNNSFYTDERQLNLVGHTWELWKEGEVLKLVDPSLNDSFSEDEVLRCVHAGLLCVEENADDRPSISVIVSMLANKSKVTTVPKKPAYYVRTKVLGEETSTRDFGLDSTHENSLYVSSI*	818

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phac11g02335	817	Pfam	D-mannose binding lectin	110	211	IPR001480	-
	Phac11g02335	817	SMART	blect_4	59	187	IPR001480	-
	Phac11g02335	817	CDD	STKc_IRAK	506	771	-	-
	Phac11g02335	817	Gene3D	Transferase(Phosphotransferase) domain 1	576	787	-	-
	Phac11g02335	817	ProSiteProfiles	Protein kinase domain profile.	500	777	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Phac11g02335	817	SMART	serkin_6	500	778	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Phac11g02335	817	Pfam	Protein tyrosine and serine/threonine kinase	503	770	IPR001245	GO:0004672\|GO:0006468
	Phac11g02335	817	SUPERFAMILY	Protein kinase-like (PK-like)	486	788	IPR011009	-
	Phac11g02335	817	ProSiteProfiles	PAN/Apple domain profile.	326	409	IPR003609	-
	Phac11g02335	817	PIRSF	SRK	31	306	IPR024171	GO:0004674
	Phac11g02335	817	PIRSF	SRK	303	817	IPR024171	GO:0004674
	Phac11g02335	817	Gene3D	Phosphorylase Kinase; domain 1	460	575	-	-
	Phac11g02335	817	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	621	633	IPR008271	GO:0004672\|GO:0006468
	Phac11g02335	817	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase	465	575	-	-
	Phac11g02335	817	ProSiteProfiles	Bulb-type lectin domain profile.	59	180	IPR001480	-
	Phac11g02335	817	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase	576	779	-	-
	Phac11g02335	817	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	278	811	-	-
	Phac11g02335	817	SUPERFAMILY	alpha-D-mannose-specific plant lectins	107	207	IPR036426	-
	Phac11g02335	817	Gene3D	-	53	184	IPR036426	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phac11g02335	Phac-Chr11	34430504	34435052	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Phac11g02335	488	790	Receptor kinase-like Gene Family	AT3G45860	58.361	4.54e-122	381

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Phac11g02335		PK_Tyr_Ser-Thr	2.6e-49	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Phac11g02335	-		-	vra:106778432	1288.09