Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g02267 ATGTCTCATTCTGACAACCCTAAAATGCATTCCTCCACCACCTTCCTCCATGATCTTCCTCCTCTCAAGAGGCTTCGACTCATTCAACAGCACCAACAACAACAACCACTTCAAAATCACTTTTTTCACTCTTCACCACAAAAACACCAAAATCACTTTTCTGATTTACCCGCCAAAAAACGCAAAGAGTCTCGAACCCCTTCTCCACCCTCTGCTACTACCCTTCACAACTTTTCTCTTCCCGCCAAAAAACGAGTGTGGGCCCCGCACCCCCAAAGTCCCAGTTCCTCAAACGACACCGTTCCCGCTTCGGAGACCACGCCCTCCTCAAACGACGCGCTTCCTCTTCCTCCTGCCTTCGATCTCAACATCGAATACAACCCCGACCTCGGAGAATCCGAAAATGGCGGCGACGACGACGACGGGGTTTTGTGCTGCGTGTGCCAGAGCACGGACGGCGACCCTGAGGACCCGATTGTGTTCTGCGACGGATGCGACCTCACGGTGCACGCCTCCTGCTACGGGAACCCTCTGTCGAAAGGCGTGCCCGACGGAGACTGGTTCTGCGAACGGTGTCGTGTCGGAGACGCCGGCGAGAGCAAAGGCTGCGCGTTGTGTCCCTCGAGCGAGGGCGCGATGAAGCGCACCGCGGAGGGTGCCTGGGCGCACGTGGTGTGCGCGCTGTTCGTGCCGGAGGTGTTTTTCCAGGACCCGGAAGGGAGGGAGGGGATCGACTGCTCCATGGTGCCCAAGAAGAGGTGGTCGCAAAGGTGCTACCTTTGCGACTGCTGTGACGGTTGTGCTCTTGTGTGTTCTGAGCCGAAGTGTGGGTTGGCGTTTCATGTGACGTGCGCGCTGAAGAAGGAGCTTTGGATTGAGTACAAGGAAGGGAAGAAAGGTGGCACCATTGTTGCTGGCTTCTGCAAAACGCACACCCAAATATGGGAAAAGCAACAGCAATCTGGGAAGTACAAAATTGTCCCTCTTGAAGATGAAAAGTAG 1002 0.5539 MSHSDNPKMHSSTTFLHDLPPLKRLRLIQQHQQQQPLQNHFFHSSPQKHQNHFSDLPAKKRKESRTPSPPSATTLHNFSLPAKKRVWAPHPQSPSSSNDTVPASETTPSSNDALPLPPAFDLNIEYNPDLGESENGGDDDDGVLCCVCQSTDGDPEDPIVFCDGCDLTVHASCYGNPLSKGVPDGDWFCERCRVGDAGESKGCALCPSSEGAMKRTAEGAWAHVVCALFVPEVFFQDPEGREGIDCSMVPKKRWSQRCYLCDCCDGCALVCSEPKCGLAFHVTCALKKELWIEYKEGKKGGTIVAGFCKTHTQIWEKQQQSGKYKIVPLEDEK* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g02267 333 Pfam PHD-finger 145 193 IPR019787 -
Phac11g02267 333 CDD PHD_BRPF_JADE_like 144 192 - -
Phac11g02267 333 ProSiteProfiles Extended PHD (ePHD) domain profile. 200 312 IPR034732 -
Phac11g02267 333 Pfam PHD-zinc-finger like domain 203 310 - -
Phac11g02267 333 SUPERFAMILY FYVE/PHD zinc finger 133 206 IPR011011 -
Phac11g02267 333 PANTHER PHD FINGER PROTEINS 136 312 - -
Phac11g02267 333 MobiDBLite consensus disorder prediction 90 113 - -
Phac11g02267 333 CDD ePHD 203 311 - -
Phac11g02267 333 ProSitePatterns Zinc finger PHD-type signature. 145 192 IPR019786 -
Phac11g02267 333 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 197 314 IPR013083 -
Phac11g02267 333 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 131 196 IPR013083 -
Phac11g02267 333 MobiDBLite consensus disorder prediction 42 136 - -
Phac11g02267 333 SMART PHD_3 257 312 IPR001965 -
Phac11g02267 333 SMART PHD_3 144 193 IPR001965 -
Phac11g02267 333 ProSiteProfiles Zinc finger PHD-type profile. 142 195 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g02267 Phac-Chr11 33700889 33702570 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac11g02267 34 333 C2H2 Transcription Factor Family AT3G14740 47.230 6.43e-99 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Phac11g02267 zf-HC5HC2H_2 3.8e-26 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g02267 K11380 - gmx:100802652 444.121