Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g02262 ATGCACCGAAGAATGTTCGCTGTTCCTCCTCTCCCTCATGCCCCAAACGGTTTCTCGCCGCAGCATAGAACTGCAGCAAATCCCAGTAGCTTCAGTCCGACACTTGCATATATCTTTCTCATTGTCTTCCTCATCATCTCCTTCTTCGTCGGTTTGATATATTTCTACATGCGAAGGCGATCCTCCTCGACGAACCCCGCGGCCGGCGACAACCAAGGGCAAGCGGTGTCGAATCCCGTGGCTTCGAGACCTCTGGCGGTGGTGGCCGTGGTGGCCGAAGCAGCTGGAGAGTGTACTATCTGTCTGGTGGGGGTGGCAGAGGGAGAGGAGGTGAAGATGACTGTCCACTGTAAGCACATCTTCCACACGAACTGCATCGATACTTGGCTGGAGAACCATGTTACGTGCCCGGTGTGCCGATATTCTGAGATGGGTGGAGAGGAGGAGCTTGTGACGGTTGGAGGAGGTGAAGAAGAAGAAGATGAAGTTTCTGAAACAGAGTAG 504 0.5377 MHRRMFAVPPLPHAPNGFSPQHRTAANPSSFSPTLAYIFLIVFLIISFFVGLIYFYMRRRSSSTNPAAGDNQGQAVSNPVASRPLAVVAVVAEAAGECTICLVGVAEGEEVKMTVHCKHIFHTNCIDTWLENHVTCPVCRYSEMGGEEELVTVGGGEEEEDEVSETE* 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g02262 167 ProSiteProfiles Zinc finger RING-type profile. 98 140 IPR001841 -
Phac11g02262 167 SMART ring_2 98 139 IPR001841 -
Phac11g02262 167 Pfam Ring finger domain 97 140 IPR001841 -
Phac11g02262 167 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 17 142 - -
Phac11g02262 167 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 61 144 IPR013083 -
Phac11g02262 167 MobiDBLite consensus disorder prediction 1 23 - -
Phac11g02262 167 SUPERFAMILY RING/U-box 97 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g02262 Phac-Chr11 33627624 33628127 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac11g02262 77 167 C3H Transcription Factor Family AT2G27940 40.217 1.75e-17 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g02262 - K10664 pvu:PHAVU_011G170400g 181.415