Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g02248 ATGAAGATTCAGTGCAACGTCTGCGAAGCTGCGGAGGCCAAGGTCCTGTGTTGCGCTGACGAGGCCGCACTGTGCTTGGAATGCGATGAAAAGGTTCACGCCGCCAACAAGCTCGCCACCAAGCACCAAAGAGTCCCCCTTTCTCTCTCTGCTTCCCACGTGCCAAAGTGTGACATATGCCAGGAAATGGTTGGTTATTTCTTCTGTTTAGAGGATCGGGCTTTGCTATGTAGGAATTGTGATGTATCTGTTCACACTGCTAATGCCTGTGTCTCTGGTCATCAAAGGTTTTTGCTTACTGGTGTGAGAGTAGGCCTTGAAGCTACTGAGTGTGGTGCTTCCTCGTCCTCTGTCAAGTCACAATCTGGGGAGAAAACATCTGATGCTAAATCTTCATCCATCTCCAGAAATGTCTCCTCCCTGCCTCAGCCATCAAATTTCAATGAAGTGCTACCCTCCCAAATGGGAGGATTTGAGGACTTTCCACCAAACAAGGTGTCTTATGGTGGTGGTTATACTGCTGGAAACGTCTCACAATGGCCCATGGAAGAATTTATCGGGTTAAATGAATTCAGTCAGTATTATAACTATATGGATGGATCATCTAAGGCTGACAGTGGTAAACTTGGGGATTCTGATTCTTCAGTTTTGAGGTCTATTGAAGAGGAAATGGATGATGACTCCTTCTTGGGGCGTGTCCCAGATTCATCCTGGACAGTTCCTCAGATCTCTTCCCCTCCGACGGCTTCCGGATTACACTGTCCGGAAATCCGTCGGCATACATCTGACAATGCTATGTTTGTTCCTGACATATGCTTTTCTGACGTCCGGCGGCAGCCTCACCATGTTCTTCATAACTCTATTCATTCAAAACGGCGGAGGAACCTATAA 891 0.4736 MKIQCNVCEAAEAKVLCCADEAALCLECDEKVHAANKLATKHQRVPLSLSASHVPKCDICQEMVGYFFCLEDRALLCRNCDVSVHTANACVSGHQRFLLTGVRVGLEATECGASSSSVKSQSGEKTSDAKSSSISRNVSSLPQPSNFNEVLPSQMGGFEDFPPNKVSYGGGYTAGNVSQWPMEEFIGLNEFSQYYNYMDGSSKADSGKLGDSDSSVLRSIEEEMDDDSFLGRVPDSSWTVPQISSPPTASGLHCPEIRRHTSDNAMFVPDICFSDVRRQPHHVLHNSIHSKRRRNL* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g02248 296 SMART bboxneu5 4 47 IPR000315 GO:0008270
Phac11g02248 296 SMART bboxneu5 52 99 IPR000315 GO:0008270
Phac11g02248 296 CDD Bbox1_BBX-like 5 47 - -
Phac11g02248 296 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Phac11g02248 296 Gene3D Classic Zinc Finger 1 92 - -
Phac11g02248 296 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Phac11g02248 296 Pfam B-box zinc finger 54 95 IPR000315 GO:0008270
Phac11g02248 296 FunFam B-box zinc finger protein 22 1 93 - -
Phac11g02248 296 MobiDBLite consensus disorder prediction 115 146 - -
Phac11g02248 296 CDD Bbox1_BBX-like 56 99 - -
Phac11g02248 296 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g02248 Phac-Chr11 33510800 33514638 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac11g02248 1 271 C2C2-CO-like Transcription Factor Family AT1G78600 48.377 4.49e-85 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Phac11g02248 zf-B_box 3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g02248 - - gmx:100808889 496.508