Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g02198 ATGAATAGCAACTTCCCAGTTCTCTCATTTCACTGCAACAACTGGGATTTAACCTTTTCCTCTATTAGCTTATCATTAAAGACAAAACATTTCCAACACCCTCCTCTGTGCACTATTCCTCTACCTTTATGCTTACACAAGCACACAATTAACAAAACGGAGCCTGTGGTCCACACCCTTCTTTTCTGCCTTTCTGCTTCCTATAAACTCCCTCTTTTGCTCCAAAAAGTTCTGCCTCACCAACAACCTTACGTCCTCCTTCACCATTGCCACCATCACCATTCACCACCCTTTTGCACAATGGAGGCCAGGACTCTGGAGAGGAAGAGATCACTGGTTGAGAGGGTGAGAAAGAATGTGGAGGAGGAAGTGGAAAATGAACTGGAAGAGGAGGATGAAAGTGCTGCTAGTCTCACAGAAGATGAGAAAAAGAGAGGGCTTAGTAGCAATAGTGGTGGCGGGAGAAGAGGGTCAAGTGGGGGTGGTGGAGGTGTTTCTCCGCCTTCCTGTCAAGCAGAGAGGTGTGGTGCTGATTTGACTGATGCAAAGAGGTACCATCGCCGCCATAAGGTGTGTGAGTTTCACTCCAAAGCTCCTGCTGTGGTGGTTGCAGGGCTGAGGCAGAGGTTTTGCCAGCAATGTAGCAGGTTCCATGACCTGGCGGAGTTTGATGAGTCTAAGAGAAGCTGCCGGAGGCGGTTGGCCGGACACAACGAACGGCGCCGGAAAAGCAACCCTGAAGCCGCCAGCGATGGCAGCAGCCACAGCAGCAAAGGCCATCACCACCCTAAGGAAACGACACACTGCAGGCTTGCTGATGAGAGGGGGAGAATTCAGATGAACCTACCAGGGAGTTCTGGCTACAAGTCTTTCAACATCAGATGA 885 0.5006 MNSNFPVLSFHCNNWDLTFSSISLSLKTKHFQHPPLCTIPLPLCLHKHTINKTEPVVHTLLFCLSASYKLPLLLQKVLPHQQPYVLLHHCHHHHSPPFCTMEARTLERKRSLVERVRKNVEEEVENELEEEDESAASLTEDEKKRGLSSNSGGGRRGSSGGGGGVSPPSCQAERCGADLTDAKRYHRRHKVCEFHSKAPAVVVAGLRQRFCQQCSRFHDLAEFDESKRSCRRRLAGHNERRRKSNPEAASDGSSHSSKGHHHPKETTHCRLADERGRIQMNLPGSSGYKSFNIR* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g02198 294 MobiDBLite consensus disorder prediction 120 171 - -
Phac11g02198 294 ProSiteProfiles Zinc finger SBP-type profile. 167 244 IPR004333 GO:0003677
Phac11g02198 294 Pfam SBP domain 170 243 IPR004333 GO:0003677
Phac11g02198 294 SUPERFAMILY SBT domain 168 248 IPR036893 GO:0003677|GO:0005634
Phac11g02198 294 MobiDBLite consensus disorder prediction 240 275 - -
Phac11g02198 294 Gene3D - 161 231 IPR036893 GO:0003677|GO:0005634
Phac11g02198 294 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 148 258 IPR044817 GO:0003677
Phac11g02198 294 MobiDBLite consensus disorder prediction 234 294 - -
Phac11g02198 294 Coils Coil 103 141 - -
Phac11g02198 294 FunFam Squamosa promoter-binding-like protein 14 162 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g02198 Phac-Chr11 33023100 33025002 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac11g02198 154 249 SBP-box Gene Family AT1G53160 68.750 4.51e-39 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Phac11g02198 SBP 3.1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g02198 - - vra:106755766 278.1