Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g02141 ATGTCACATTCTGGGAAACCCGTATCCGAGTTAGGGCTCAGCGAGCGCTTGCGCGACTCACTGAGTTGCTCTGACGATTCCAACAAGCCCGATTTCCGAGAACTCGATTTGGGCTCGCCGGTTTCCACATTGCGGCCACGCCAGCACTTCCAAAACCACAGTGCGCCCACCACGAGTAGTAACAGTAGCAGTAGTAGCGGCGGCTCTACAGGGTCGGTTCCGGGTCGGAGCAACCCGGTTTCGGGAAGATCCCATTCCGGCGAGTTGTCCGGGTCGAGTGAGACTAATAGTCCGACCCGGGTATCCAAACCGGGTCACCGGAGATCTAGTTCTAGTCAGAGTTTGAGTCAGAGTCAGAGCCAGAGATCCCCGTCGTCGTCATCTGCTGCCGTGAATTCGCCGCCGCTGAATGTTCTCCCGGCTGGGAACATTTGCCCGTCCGGGAGGGTTCTCAAGGCAGCGACGGTGCCGGCAGTGGCGAGCCGGAGCTCCAGGAGTGATGTATTGGGGTCCGGCACGGGGAATTACGGCCACGGGAGCATAATGCGTGGCGGAAAGGGTGGCGGTGATGCGGCGAATGTTAAGATCGGCGGCGGTGATGCGGCGAATGTTAAGATCGGCGGCGGTGATTCGGGGAAGCGCGTGGATCCGGAGGAGGTGAAGAGGATGGGGAATGAGGAGTACAAGAGAGGGCACTTTGGTGAGGCCTTGTGTTTGTATGATCGGGCAATTGCGATGTCTCCGGGCAATGCCGCTTATCGGAGCAACCGGGCGGCAGCATTGACCGGATTGGGACGGCTGCCGGAGGCGGTGAGGGCGTGTGAGGAGGCTGTGGGGTTGGATCCTAATTATGGGAGGGCGCATCAGCGCTTGGCAACGCTGTTTTTAAGGTTAGGACAGGTTGAGGATGCTAGGAAGCACCTTTGTTATCCTGGGCTGCACCCGGATCCTGCTGAGTTGCAGAAGTTGCAAATTGTGGAAAAGCATATTAACAAATGTGGAGATGTTCGGAGGATAAGAGATTGGAACAGCGTACTGAGGGAGGTTGATGCTGCTGTAGCTGCTGGAGCAGACTCTTGTGTTCAGCTCTTTATGTGTAGAGCTGAAGCCCTTCTCAAGCTACACCAGATGGATGATGCTGAATTGTGTTTATCATGGATTCCCAAAAGTGAGCCTCATCCGAGTTCCTTGGCACAGGCAAGATTTTTCGGGATGTTTTCTGAGGCTTACTGCTACTTTGTGAGAGCTCAGATTGAGATGGCTTTTGGAAGGTTTGAGAATGCAGTTACAGCTGCTGAGAAAGCTAGTCAGATTGACCCCCGAAATGTTGAAGTTGCTGTTCTGCTCAAGAATGTGAGGATGGTGGCTAGAGCTAGACTGCGTGGCAATGATCTTTTTAAATCAGAAAGGTTCACTGAGGCGTGCTCGGCATATGGAGAAGGTTTGAGGCTTGATCCTTCAAACTCTGTTCTCTACTGCAATAGAGCAGCATGTTGGTTTAAGCTTGGGCAATGGGAAAGATCAATTGAGGATTGCAATCAAGCTTTACGTATCCAACCAAATTACACAAAAGCAATTCTTCGGAGAGCTGCCTCAAACAGCAAGTTAGAAAGATGGGAAGAAGCAGTAAAGGATTATGAACTTTTGCGGAGAGAATTACCAGATGACAATGGTGTTGCGGAAAATCTGTTTCATGCACAAGTAGCATTAAAAAAATCTCGTGGGGAAGAAGTACAAAATTTAAAGTTTGGTGGTGAAGTGGAGGACATATCGGGTCTTGAGCAGTTTAGAGCTGCAATATCTTTACCAGGTGTTTCTGTTGTCCATTTTGAAACTGCATCAAACTCGCAATGTAAGCAGATATCTCCTTTTGTGGTTACACTGTGCAGTCGCTATCCATCTATCAACTTTCTTAAGGTGGATATTCAAGCAAGCCCTGCAGTTGCCACTGCGGAGAATGTTAGGGTTGTACCAACCTTCAAGATCTACAAAAATGGCAGTCGAGTGAAGGAAATTATATGTCCTAGTCATGATATGTTGGAACATTCCATTAGGCATTACAGCTTGTAG 2070 0.5034 MSHSGKPVSELGLSERLRDSLSCSDDSNKPDFRELDLGSPVSTLRPRQHFQNHSAPTTSSNSSSSSGGSTGSVPGRSNPVSGRSHSGELSGSSETNSPTRVSKPGHRRSSSSQSLSQSQSQRSPSSSSAAVNSPPLNVLPAGNICPSGRVLKAATVPAVASRSSRSDVLGSGTGNYGHGSIMRGGKGGGDAANVKIGGGDAANVKIGGGDSGKRVDPEEVKRMGNEEYKRGHFGEALCLYDRAIAMSPGNAAYRSNRAAALTGLGRLPEAVRACEEAVGLDPNYGRAHQRLATLFLRLGQVEDARKHLCYPGLHPDPAELQKLQIVEKHINKCGDVRRIRDWNSVLREVDAAVAAGADSCVQLFMCRAEALLKLHQMDDAELCLSWIPKSEPHPSSLAQARFFGMFSEAYCYFVRAQIEMAFGRFENAVTAAEKASQIDPRNVEVAVLLKNVRMVARARLRGNDLFKSERFTEACSAYGEGLRLDPSNSVLYCNRAACWFKLGQWERSIEDCNQALRIQPNYTKAILRRAASNSKLERWEEAVKDYELLRRELPDDNGVAENLFHAQVALKKSRGEEVQNLKFGGEVEDISGLEQFRAAISLPGVSVVHFETASNSQCKQISPFVVTLCSRYPSINFLKVDIQASPAVATAENVRVVPTFKIYKNGSRVKEIICPSHDMLEHSIRHYSL* 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g02141 689 SMART tpr_5 455 488 IPR019734 GO:0005515
Phac11g02141 689 SMART tpr_5 523 556 IPR019734 GO:0005515
Phac11g02141 689 SMART tpr_5 489 522 IPR019734 GO:0005515
Phac11g02141 689 SMART tpr_5 251 284 IPR019734 GO:0005515
Phac11g02141 689 SMART tpr_5 217 250 IPR019734 GO:0005515
Phac11g02141 689 SMART tpr_5 361 394 IPR019734 GO:0005515
Phac11g02141 689 SMART tpr_5 409 442 IPR019734 GO:0005515
Phac11g02141 689 SUPERFAMILY Thioredoxin-like 492 687 IPR036249 -
Phac11g02141 689 Gene3D Glutaredoxin 581 688 - -
Phac11g02141 689 ProSiteProfiles TPR repeat profile. 217 250 IPR019734 GO:0005515
Phac11g02141 689 Coils Coil 529 549 - -
Phac11g02141 689 Gene3D Tetratricopeptide repeat domain 215 575 IPR011990 GO:0005515
Phac11g02141 689 MobiDBLite consensus disorder prediction 1 137 - -
Phac11g02141 689 ProSiteProfiles TPR repeat profile. 409 442 IPR019734 GO:0005515
Phac11g02141 689 ProSiteProfiles TPR repeat profile. 489 522 IPR019734 GO:0005515
Phac11g02141 689 MobiDBLite consensus disorder prediction 19 33 - -
Phac11g02141 689 Pfam Thioredoxin 595 681 IPR013766 -
Phac11g02141 689 Pfam Tetratricopeptide repeat 411 442 IPR019734 GO:0005515
Phac11g02141 689 MobiDBLite consensus disorder prediction 44 134 - -
Phac11g02141 689 CDD TRX_family 594 675 - -
Phac11g02141 689 MobiDBLite consensus disorder prediction 156 183 - -
Phac11g02141 689 MobiDBLite consensus disorder prediction 159 173 - -
Phac11g02141 689 FunFam TPR repeat-containing thioredoxin TTL4 581 688 - -
Phac11g02141 689 Pfam Tetratricopeptide repeat 491 522 IPR001440 GO:0005515
Phac11g02141 689 SUPERFAMILY TPR-like 217 445 IPR011990 GO:0005515
Phac11g02141 689 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 22 686 IPR044534 -
Phac11g02141 689 Pfam Tetratricopeptide repeat 223 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g02141 Phac-Chr11 32144067 32149291 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac11g02141 454 599 U-box Gene Family AT3G07370 28.415 1.91e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g02141 - - gmx:100799577 1135.55