Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g02135 ATGGATCTGACTAAGAAGCGCAAGCTTGATGAGAACGGTTTCGGTGATTCTGACCCGCTTAAACTCTCACCCTCCGAGGCGCGTAAGCTCATCGAGCGCTTCACCCCGGAGCAGCTCCTCGACATCCTCCAGGACGCGGTGGCGCGCCACGCCGACGTGCTTGCCTCCGTACGCGCTGTCGCGGACCCCGATGTGTCGCAGCGGAAACTCTTCGTACGCGGCCTCGGGTGGGACACTACCACCGACGGGCTCCGCTCGCTTTTCTCCGCATACGGCGAGCTTGAGGAGGCTGTTGTAATCGTCGACAAGGCAACCGGCAAGTCCAAGGGCTACGGTTTCGTCACCTTCCGCCACGTAGACGGCGCGATCCTCGCCCTGCGCGAACCCAGCAAGCGCATCGACGGGCGAGTGACCGTCACGCAGCTCGCTGCCGCGGGAAACTCCGCGTCAAACGCCAACGCTGCTGATGTTGCGCTAAGGAAGATCTACGTGGCCAACGTGCCGCCGGACCTCCCGGCTAATAAGCTCCTCGCGCATTTTTCTGTGTATGGTGAGATCGAAGAGGGCCCGTTAGGGTTTGATAAACAAACTGGAAAATCAAAGGGGTTTGCGCTTTTTGTTTACAAGACTCCTGAAGGGGCTCAAGCTGCGTTATTAGATCCTGTGAAGACTGTTGAAGGAAGGCAATTGAGTTGTAAATTGGCGATAACGGATGGGAAGCAGGGGAAGCGAGCCGGACCAGATTCGGGTCAGGCGCATGGGAATGTTCAGCACGGTCATGGGGATGGGGTGGGGGCTGGAATGGGGATGCCTCCTGCGGCAGGGTCTGGACCGGGCCAGTATGGCGGCCCGCAGTATGGAGGACCGGTTGCGTTGGGTTCGTATGGTGGGTTTGGTGGACAGCCTCCGTTGGGTAACCATAATCATCCTCTGAATTCGTCCAATCCCGTTCCCGGTTCCATGGCGGGTGCTGGAGGATACGGTGCTGGGATGGGTGGGCCTTATGGTGGATACGGTGGGCCGGGCTCGACGGGCTTTGGTGCTGCAGGTGGGTTAGGAGGAGCTGGTGGAGGTGCCGGTGTTGGTGGTGCGCTTGGAGGAGCTGGAGGGGGGCTTAGTGGTGGTGCTGGTTCTTTGTATAGATTGCCGGGTTCTGGGGGCATGCCTGCAAGCGGTGGAGGATATCCGGAGGGTGGTCATTATGGTTTATCAGCTTCGGCTGGATACCAGAACCAGCATCATCCTCCTTCTGGTGCTTCTCCTGTGCCTAGAGTTCCACCTGGTTCGATGTATCCGAATGTGCCTCCGTACTACTAA 1317 0.5892 MDLTKKRKLDENGFGDSDPLKLSPSEARKLIERFTPEQLLDILQDAVARHADVLASVRAVADPDVSQRKLFVRGLGWDTTTDGLRSLFSAYGELEEAVVIVDKATGKSKGYGFVTFRHVDGAILALREPSKRIDGRVTVTQLAAAGNSASNANAADVALRKIYVANVPPDLPANKLLAHFSVYGEIEEGPLGFDKQTGKSKGFALFVYKTPEGAQAALLDPVKTVEGRQLSCKLAITDGKQGKRAGPDSGQAHGNVQHGHGDGVGAGMGMPPAAGSGPGQYGGPQYGGPVALGSYGGFGGQPPLGNHNHPLNSSNPVPGSMAGAGGYGAGMGGPYGGYGGPGSTGFGAAGGLGGAGGGAGVGGALGGAGGGLSGGAGSLYRLPGSGGMPASGGGYPEGGHYGLSASAGYQNQHHPPSGASPVPRVPPGSMYPNVPPYY* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g02135 438 Gene3D - 151 271 IPR012677 -
Phac11g02135 438 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 70 137 IPR000504 GO:0003723
Phac11g02135 438 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 162 219 IPR000504 GO:0003723
Phac11g02135 438 MobiDBLite consensus disorder prediction 1 15 - -
Phac11g02135 438 PANTHER GEO13361P1-RELATED 152 368 - -
Phac11g02135 438 MobiDBLite consensus disorder prediction 419 438 - -
Phac11g02135 438 SUPERFAMILY RNA-binding domain, RBD 57 143 IPR035979 GO:0003676
Phac11g02135 438 FunFam UBP1-associated protein 2C isoform A 51 154 - -
Phac11g02135 438 SUPERFAMILY RNA-binding domain, RBD 148 267 IPR035979 GO:0003676
Phac11g02135 438 MobiDBLite consensus disorder prediction 1 21 - -
Phac11g02135 438 MobiDBLite consensus disorder prediction 238 317 - -
Phac11g02135 438 MobiDBLite consensus disorder prediction 403 438 - -
Phac11g02135 438 SMART rrm1_1 69 141 IPR000504 GO:0003723
Phac11g02135 438 SMART rrm1_1 161 233 IPR000504 GO:0003723
Phac11g02135 438 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 160 237 IPR000504 GO:0003723
Phac11g02135 438 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 68 145 IPR000504 GO:0003723
Phac11g02135 438 Gene3D - 44 150 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g02135 Phac-Chr11 32052374 32058649 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac11g02135 156 235 C2H2 Transcription Factor Family AT2G19380 40.000 1.32e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g02135 K12741 - gmx:100776220 599.356