Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g02109 ATGGAATCTAAATACTTCGACACCAATGGGGAAGTCTCCCTAAAGCAAAAATCAAAATCGATTTCAGCAGAGCCAACAATCTCTACTAGTGAAAATGATTGCTTTGATTGCAATATTTGTTTGGAATCAGCACATGACCCTGTGGTTACACTCTGTGGTCACCTTTACTGTTGGCCATGCATATACAAGTGGCTTGATGTTCAAAACTCCTCTGTTGAACCAGACCAGCAGAAGACATGCCCAGTTTGCAAATCTCAGATCTCTCACACCTCTGTAGTCCCCCTCTATGGCCGTGGAACATCAAATCCAGAATCAAAAGCCAGAAAACTCCAGATGAGTCTAGGAATACCTCACAGGCCACCTCCTTACAGCCTGAATGATATGTTAACTTCTGCTCGTGCACCAGCACAATCTGGCCAGCAACTTCGTTCAAGTTATTTCCAGTCACAGTCAAGACCAATTCATTATCAGCAGTATTTCCCTGACCTCTATGGAAGCTATGGCACCAATGGGTTGCCTTATCTTGGAGGTGCTGCTATGACTAGCTTCTTTAATCCTATGATTGGTATGTTTGGGGAGATGGTCTTGACAAGAATTTTTGGGGTCTCAGATGCAAACTTGTTTTCATACCCTCATAATGGAAATGGAAGTCCTAGAATGAGAAGGCAAGAAATGCAGATTGACAGGTCTCTGAACAGACTTTCCATCTTTCTCCTATGTTGTATCATTTTGTGTCTTCTCTTATTTTGA 750 0.424 MESKYFDTNGEVSLKQKSKSISAEPTISTSENDCFDCNICLESAHDPVVTLCGHLYCWPCIYKWLDVQNSSVEPDQQKTCPVCKSQISHTSVVPLYGRGTSNPESKARKLQMSLGIPHRPPPYSLNDMLTSARAPAQSGQQLRSSYFQSQSRPIHYQQYFPDLYGSYGTNGLPYLGGAAMTSFFNPMIGMFGEMVLTRIFGVSDANLFSYPHNGNGSPRMRRQEMQIDRSLNRLSIFLLCCIILCLLLF* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g02109 249 FunFam E3 ubiquitin-protein ligase RMA1H1 10 104 - -
Phac11g02109 249 SMART ring_2 37 83 IPR001841 -
Phac11g02109 249 SUPERFAMILY RING/U-box 33 96 - -
Phac11g02109 249 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 12 246 IPR045103 GO:0005783|GO:0006511|GO:0061630
Phac11g02109 249 ProSitePatterns Zinc finger RING-type signature. 52 61 IPR017907 -
Phac11g02109 249 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 11 157 IPR013083 -
Phac11g02109 249 ProSiteProfiles Zinc finger RING-type profile. 37 84 IPR001841 -
Phac11g02109 249 CDD RING-HC_AtRMA-like 35 85 - -
Phac11g02109 249 Pfam Zinc finger, C3HC4 type (RING finger) 37 83 IPR018957 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g02109 Phac-Chr11 31714303 31716472 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac11g02109 9 235 C3H Transcription Factor Family AT4G27470 47.186 6.92e-58 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g02109 K10666 - gmx:100817526 395.201