Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g02099 ATGGCGAAAACGAGGCCAGGCAGAAAGGACTTGGACTCGTACACCATAAGAGGAACCAACAAGATCGTCCGAGATGGGGTTGTCGTTGACAGCGTTTGGTTCTTTGCTGCTGCAGCCGGTGATTGCGTTCTGATGCGGCCCTCGGACACGTCCAAGCCCCCTTACGTGGCGCGCGTGGAGAAGATCGAGCAGGACAACAGGAACAACGTCAAGGTGCGTGTGAGGTGGTACTACAGACCCGAAGAGTCCATTGGTGGTCGCAGACAGTTCCATGGTGCCAAAGAGCTTTTTCTCTCCGACCACTATGATGTGCAGAGTGCGCACACCATTGAAGGCAAATGCGTTGTACACTCTTTCAAGAACTACACTAAGCTCGAGAATGTGGGTGCTGAGGATTACTATTGTAGATTTGAGTACAAGGCTGCCACTGGGGCTTTCACTCCTGACCGTGTTGCTGTGTATTGCAAGTGTGAGATGCCATATAACCCGGATGACCTCATGGTTCAATGTGAAGGGTGCAAGGATTGGTATCATCCTGCTTGTGTGGGCATGACTATCGAAGAAGCAAAGAAATTAGATCATTTTGTGTGTTCTGAATGTTCATCTGATGATGATATGAATATGAAGAAACCACAAGCTACGTTTTCTGCATCACCAGTAGCTGATGGCAAGGTGGAGCCCAAGAGGCGAAAGAGATGA 699 0.495 MAKTRPGRKDLDSYTIRGTNKIVRDGVVVDSVWFFAAAAGDCVLMRPSDTSKPPYVARVEKIEQDNRNNVKVRVRWYYRPEESIGGRRQFHGAKELFLSDHYDVQSAHTIEGKCVVHSFKNYTKLENVGAEDYYCRFEYKAATGAFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWYHPACVGMTIEEAKKLDHFVCSECSSDDDMNMKKPQATFSASPVADGKVEPKRRKR* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g02099 232 SMART PHD_3 154 201 IPR001965 -
Phac11g02099 232 Gene3D - 9 148 IPR043151 -
Phac11g02099 232 Pfam BAH domain 38 149 IPR001025 GO:0003682
Phac11g02099 232 CDD BAH_BAHCC1 40 170 - -
Phac11g02099 232 ProSitePatterns Zinc finger PHD-type signature. 155 200 IPR019786 -
Phac11g02099 232 MobiDBLite consensus disorder prediction 203 232 - -
Phac11g02099 232 Pfam PHD-finger 154 202 IPR019787 -
Phac11g02099 232 SMART BAH_4 38 150 IPR001025 GO:0003682
Phac11g02099 232 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 149 215 IPR013083 -
Phac11g02099 232 ProSiteProfiles BAH domain profile. 35 150 IPR001025 GO:0003682
Phac11g02099 232 ProSiteProfiles Zinc finger PHD-type profile. 152 203 IPR019787 -
Phac11g02099 232 SUPERFAMILY FYVE/PHD zinc finger 146 204 IPR011011 -
Phac11g02099 232 FunFam Chromatin remodeling protein EBS 1 146 - -
Phac11g02099 232 FunFam Bromo-adjacent homology (BAH) domain-containing protein 147 220 - -
Phac11g02099 232 PANTHER OS08G0421900 PROTEIN 1 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g02099 Phac-Chr11 31583882 31587842 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac11g02099 45 146 Core DNA Replication Machinery Family AT4G14700 29.126 7.62e-10 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Phac11g02099 BAH 1.3e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g02099 K25868 - gmx:100800993 437.187