Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g02096 ATGGCGAAAACGAGGCCAGGCAGAAAGGACTTGGACTCGTACACCATAAGAGGAACCAACAAGATCGTCCGAGCCGGTGATTGCGTTCTGATGCGGCCCTCGGACACGTCCAAGCCCCCTTACGTGGCGCGCGTGGAGAAGATCGAGCAGGACAACAGGAACAACGTCAAGGTGCGTGTGAGGTGGTACTACAGACCCGAAGAGTCCATTGGTGGTCGCAGACAGTTCCATGGTGCCAAAGAGCTTTTTCTCTCCGACCACTATGATGTGCAGAGTGCGCACACCATTGAAGGCAAATGCGTTGTACACTCTTTCAAGAACTACACTAAGCTCGAGAATGTGGGTGCTGAGGATTACTATTGTAGATTTGAGTACAAGGCTGCCACTGGGGCTTTCACTCCTGACCGTGTTGCTGTGTATTGCAAGTGTGAGATGCCATATAACCCGGATGACCTCATGGTTCAATGTGAAGGGTGCAAGGATTGGTATCATCCTGCTTGTGTGGGCATGACTATCGAAGAAGCAAAGAAATTAGATCATTTTGTGTGTTCTGAATGTTCATCTGATGATGATATGAATATGAAGAAACCACAAGCTACGTTTTCTGCATCACCAGTAGCTGATGGCAAGGTGGAGCCCAAGAGGCGAAAGAGATGA 657 0.4932 MAKTRPGRKDLDSYTIRGTNKIVRAGDCVLMRPSDTSKPPYVARVEKIEQDNRNNVKVRVRWYYRPEESIGGRRQFHGAKELFLSDHYDVQSAHTIEGKCVVHSFKNYTKLENVGAEDYYCRFEYKAATGAFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWYHPACVGMTIEEAKKLDHFVCSECSSDDDMNMKKPQATFSASPVADGKVEPKRRKR* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g02096 218 ProSiteProfiles Zinc finger PHD-type profile. 138 189 IPR019787 -
Phac11g02096 218 PANTHER OS08G0421900 PROTEIN 1 210 - -
Phac11g02096 218 SMART PHD_3 140 187 IPR001965 -
Phac11g02096 218 CDD BAH_BAHCC1 22 156 - -
Phac11g02096 218 FunFam Bromo-adjacent homology (BAH) domain-containing protein 133 206 - -
Phac11g02096 218 SUPERFAMILY FYVE/PHD zinc finger 132 190 IPR011011 -
Phac11g02096 218 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 135 201 IPR013083 -
Phac11g02096 218 Gene3D - 2 134 IPR043151 -
Phac11g02096 218 Pfam BAH domain 23 135 IPR001025 GO:0003682
Phac11g02096 218 MobiDBLite consensus disorder prediction 189 218 - -
Phac11g02096 218 FunFam Chromatin remodeling protein EBS 1 132 - -
Phac11g02096 218 ProSiteProfiles BAH domain profile. 21 136 IPR001025 GO:0003682
Phac11g02096 218 SMART BAH_4 21 136 IPR001025 GO:0003682
Phac11g02096 218 ProSitePatterns Zinc finger PHD-type signature. 141 186 IPR019786 -
Phac11g02096 218 Pfam PHD-finger 140 188 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g02096 Phac-Chr11 31583882 31587842 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac11g02096 31 132 Core DNA Replication Machinery Family AT4G14700 29.126 3.59e-10 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Phac11g02096 BAH 5.2e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g02096 K25868 - gmx:100800993 446.817