Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g02033 ATGGATGAAATGAGTGAAGGAAACATTTTTTGGCCTAATATGTGCAGAGTGGCAGTGAGAGAAAATATAGATTCTCATTGCTTACTAAATGCTTATGACAATGGGATGGTGTATGGAAGGAGAGCATTCAATGGAGTTCAACATCAACCTATTCATATAGGTTTTCCTATTTCATCTAGTTTGGCTCATAAGATTGCAAGAAATGATCCCCAAAGCTATCATGATATAGCAAGAAGCAGAAACGACTACAGATTTCTTCATCCGCAGTATCAAGCACAGCCTGCGCAAGAGATGAGAGGACACTTCATCGACTTTCATCCTCCACTTACACTTCCAACAAATCCTTCAAGCACATTTCTCCATCCGCAGTATCAAGCACAGCAAGAGATGAGAGGACACTCCATCGACTTTCATCCTCCACTAACACTTCCAACAAATCCTTCAAGAACATTTCTCCATCCACAGTATCAAGCACAGCCTGCGCAAGAGATGAGAGGACACTCCATCGACTTTCATCCTCCCCTTACACTTCCAACAAATCCTTCAAGAACATTTCTCCATCCGCAGTATCAAGGACAGCTTGGGCAAGAGATGAGAGGACACTCCATCGACTTTCATCCTCCACTTACACTTCCAACAAATCCTTCAAGAACATTTCTCCATCCACAGTATCAAGCACAGCCTGCGCAAGAGATGAGACGACACTCCATCGACTTTCATCCTCCACTTACACTTCCGACAAATCCTTCAAGCCTTTCTTCAGTGCACATGACAACTCCTCCACACTGGAGGAATCTTCCTCCTCAAGCCTTTCTTCAAGATGATGAGCTTCTTGAATTAGATGAACGGATTGGCAACATAGTCACAGGTTTGTTGGATGAAATTATTGCAAGGCAAGTGAAGACAAAAACTTATCTACTTCCTAATAACTCGGAAGAGGTAGCTTCTGAGGAACAAGAAAATGATCTTTGCGTAATATGTCAGGATGAATATAAGAACAAGCAGGAAATTGGAATTCTTCAATGTGGACATGGATATCACGCAGATTGTATAAGGACATGGTTACACGAGAAAAATGTTTGTCCCTTATGCAAATCAGAAGCATTGACTCTTGGATAG 1119 0.4191 MDEMSEGNIFWPNMCRVAVRENIDSHCLLNAYDNGMVYGRRAFNGVQHQPIHIGFPISSSLAHKIARNDPQSYHDIARSRNDYRFLHPQYQAQPAQEMRGHFIDFHPPLTLPTNPSSTFLHPQYQAQQEMRGHSIDFHPPLTLPTNPSRTFLHPQYQAQPAQEMRGHSIDFHPPLTLPTNPSRTFLHPQYQGQLGQEMRGHSIDFHPPLTLPTNPSRTFLHPQYQAQPAQEMRRHSIDFHPPLTLPTNPSSLSSVHMTTPPHWRNLPPQAFLQDDELLELDERIGNIVTGLLDEIIARQVKTKTYLLPNNSEEVASEEQENDLCVICQDEYKNKQEIGILQCGHGYHADCIRTWLHEKNVCPLCKSEALTLG* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g02033 372 Pfam Ring finger domain 323 365 IPR001841 -
Phac11g02033 372 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 76 369 IPR045191 GO:0061630
Phac11g02033 372 ProSiteProfiles Zinc finger RING-type profile. 324 365 IPR001841 -
Phac11g02033 372 SUPERFAMILY RING/U-box 317 368 - -
Phac11g02033 372 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 301 369 IPR013083 -
Phac11g02033 372 SMART ring_2 324 364 IPR001841 -
Phac11g02033 372 CDD RING-H2_RNF24-like 322 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g02033 Phac-Chr11 30143789 30145566 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac11g02033 275 369 C3H Transcription Factor Family AT2G15530 43.158 2.71e-21 94.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g02033 K19041 - pvu:PHAVU_011G149000g 316.62