Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g02031 ATGAGACAACATTCCATCGACTTTCATCCTCCACTTACACTTCCGACAAATCCTTCAAGCCTTTCTTCAATGCGCATGACAAGTCCTCCACACTGGAGGAATCTTCCTCCTCAAGCCTTTCTTCAAGATGATGATGTTCCTTGGTTGGGTGAACATGACAGTGATATGCAGTTGGACATTGAGGACATGTCATATGAGGAGCTTCTTGAATTAGATGAACGGATTGGCAACGTAGTCACAGGTTTGTTGGATGAAATTATTGCAAGGCAAGTGAAGACAAAAACTTATCTACTTCCTAATAACTCGGAAGAGGTAGCTTCTGAGGAACAAGAAAATGATCTTTGCGTAATATGTCAGGATGAATATAAGAACAAGCAGGAAATTGGAATTCTTCAATGTGGACATGGATATCACGCAGATTGTATAAGGACATGGTTGCATGAGAAAAATGTTTGTCCCTTATGCAAATCAGAAGCATTCACTCTTGGATAG 492 0.4045 MRQHSIDFHPPLTLPTNPSSLSSMRMTSPPHWRNLPPQAFLQDDDVPWLGEHDSDMQLDIEDMSYEELLELDERIGNVVTGLLDEIIARQVKTKTYLLPNNSEEVASEEQENDLCVICQDEYKNKQEIGILQCGHGYHADCIRTWLHEKNVCPLCKSEAFTLG* 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g02031 163 SUPERFAMILY RING/U-box 108 160 - -
Phac11g02031 163 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 12 160 IPR045191 GO:0061630
Phac11g02031 163 ProSiteProfiles Zinc finger RING-type profile. 115 156 IPR001841 -
Phac11g02031 163 MobiDBLite consensus disorder prediction 1 29 - -
Phac11g02031 163 Pfam Ring finger domain 114 156 IPR001841 -
Phac11g02031 163 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 92 160 IPR013083 -
Phac11g02031 163 MobiDBLite consensus disorder prediction 10 29 - -
Phac11g02031 163 SMART ring_2 115 155 IPR001841 -
Phac11g02031 163 CDD RING-H2_RNF24-like 113 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g02031 Phac-Chr11 30115896 30116661 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac11g02031 55 160 C3H Transcription Factor Family AT2G15530 45.283 8.47e-28 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g02031 K19041 - pvu:PHAVU_011G149000g 293.508