Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g02029 ATGAAGACAAAAACTTATCTACCTCCTAAAAACTCGAGAGAGGTAGCTTCTGAGGAACAAGAAAATGATCTTTGCATAATATGTCAGGATGAATATAAGAACAAGCAGGAAATTGGAATTCTTCATTGTGGACATGGATATCACGCAGATTGTATAAGGACATGGTTACACGAGAAAAATGTTTGTCCCTTATGCAAATCAGAAGCATTGACTCTTGGATAG 222 0.3649 MKTKTYLPPKNSREVASEEQENDLCIICQDEYKNKQEIGILHCGHGYHADCIRTWLHEKNVCPLCKSEALTLG* 74
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g02029 73 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 70 IPR013083 -
Phac11g02029 73 SMART ring_2 25 65 IPR001841 -
Phac11g02029 73 SUPERFAMILY RING/U-box 18 69 - -
Phac11g02029 73 ProSiteProfiles Zinc finger RING-type profile. 25 66 IPR001841 -
Phac11g02029 73 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 70 IPR045191 GO:0061630
Phac11g02029 73 Pfam Ring finger domain 24 66 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g02029 Phac-Chr11 30040047 30040372 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac11g02029 20 70 C3H Transcription Factor Family AT2G15530 50.980 5.83e-16 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g02029 K19041 - pvu:PHAVU_011G149000g 145.206