Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g02028 ATGGATGAAATGAGTGAAGGGAACATTTTTTGGCCTAATATGTGCAGAGTGGCAGTGAGAGAAAATATAGATTCTCATTGCTTACTAAATGCTTATAACAATGGCATGGTGTATGGAAGAAGAGCATTCAATGGAGTTCAACATCAACCTATTCATATGGGTTTTCCTATTTCATCTACTCCAACTCCTTCTTTAGAGATTGCAAGAAATGATCCCCAAAGCTATCATGATATAGCAAGAAGCAGAAACGACTACAGATTTCTCCATCCGCAGTATCAAGCACAGCCTGCGCAAGAGATGAGAGGACACTTCATCGACTTTCATCCTCCACTTACACTTCAAACAAATCCTTCAAGCACATTTCTCCATCCGCAATATCAAGCACAGCCTGCGCAAGAGATGAGAGGACACTCCATCGACTTTCATCCTCCACTAACACTTCCAACAAATCATTCAAGAACATTTCTCCATCCACAGTATCAAGCACAGCCTGCGCAAGAGATGAGAGGACACTCCATCGACTTTCATCCTCCCCTTACACTTCCGACAAATCCTTCAAGAACATTTCTCCATCCGCAGTATCAAGGACAGCCTGCGCAAGAAATGAGAGGACACTCCATCGACTTTCATCCTCCACTTACACTTCCAACAAATCCTTCAAGAACATTTCTCCATCCACAGTATCAAGCACAGCCTACGCAAGAGATGAGACGACACTCCATCGACTTTCATCCTCCACTTACACTTCCGACAAATCCTTCAAGCCTTTCTTCAGTGCGCATGACAACTCCTCCACACTGGAGGAATCTTCCTCCTCAAGCCTTTCTTCAAGATAATGATGTTCCTTGGTTGGGTGAACATGACAGTGATATGCAGTTGGACATTGAGGACATGTCATATGAGGAGCTTCTTGAATTAGATGAACGGATTGGCAACTTAGTCACAGGTTTGTTGGATGAAATTATTGCAAGGCAAGTGAAGACAAAAACTTATCTACTTCCTAATAACTCGGAAGAGGTAGCTTCTGAGGAACAAGAAAATGATCTTTGCGTAATATGTCAGGATGAATATAAGAACAAGCAGGAAATTGGAATTCTTCAATGTGGACATGGATATCACGAAGATTGTATAAGGACATGGTTACATGAGAAAAATGTTTGTCCCTTATGCAAATCAGAAGCATTGACTCTTGGATAG 1197 0.4194 MDEMSEGNIFWPNMCRVAVRENIDSHCLLNAYNNGMVYGRRAFNGVQHQPIHMGFPISSTPTPSLEIARNDPQSYHDIARSRNDYRFLHPQYQAQPAQEMRGHFIDFHPPLTLQTNPSSTFLHPQYQAQPAQEMRGHSIDFHPPLTLPTNHSRTFLHPQYQAQPAQEMRGHSIDFHPPLTLPTNPSRTFLHPQYQGQPAQEMRGHSIDFHPPLTLPTNPSRTFLHPQYQAQPTQEMRRHSIDFHPPLTLPTNPSSLSSVRMTTPPHWRNLPPQAFLQDNDVPWLGEHDSDMQLDIEDMSYEELLELDERIGNLVTGLLDEIIARQVKTKTYLLPNNSEEVASEEQENDLCVICQDEYKNKQEIGILQCGHGYHEDCIRTWLHEKNVCPLCKSEALTLG* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g02028 398 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 327 395 IPR013083 -
Phac11g02028 398 SUPERFAMILY RING/U-box 343 394 - -
Phac11g02028 398 ProSiteProfiles Zinc finger RING-type profile. 350 391 IPR001841 -
Phac11g02028 398 SMART ring_2 350 390 IPR001841 -
Phac11g02028 398 Pfam Ring finger domain 349 391 IPR001841 -
Phac11g02028 398 CDD RING-H2_RNF24-like 348 394 - -
Phac11g02028 398 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 82 395 IPR045191 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g02028 Phac-Chr11 30027163 30028946 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac11g02028 290 395 C3H Transcription Factor Family AT2G15530 45.283 5.07e-27 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g02028 K19041 - pvu:PHAVU_011G149000g 382.874