Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g02027 ATGGATGAAATGAGTGAAGGAAACATTTTTTGGCCTAATATGTGCAGAGTGGCAGTGAGAGAAAATATAGATTCTCATTGCTTACTAAATGCTTATAACAATGGCATGGTGTATGGAAGAAGAGCATTCAATGGAGTTCAACATCAACCTATTCATATGGCTCCAACTCCTTCTTTAGAGATTGCAAGAAATGATCCCCAAAGCTATCATGATATAGCAAGAAGCAGAAACGACTACAGATTTCTCCATCCGCAGTATCAAGCACAGCCTGCGCAAGAGATGAGAGGACACTTCATCGACTTTCATCCTTCAGTTACACTTCAAACAAATCCTTCAAGCACATTTCTCCATCCGCAATATCAAGCACAGCCTGCGCAAGAGATGAGAGGACACTCCATCGACTTTCATCCTCCACTAACACTTCCAACAAATCATTCAAGAACATTTCTCCATCCACAGTATCAAGCACAGCCTGCGCAAGAGATGAGAGGACACTCCATCGACTTTCATCCTCCCCTTACACTTCCGACAAATCCTTCAAGAACATTTCTCCATCCGCAATATCAAGGACAGCCTGCGCAAGAAATGAGAGGACACTCCATCGACTTTCATCCTCCACTTACACTTCCAACAAATCCTTCAAGAACATTTCTCCATCCACAGTATCAAGCACAGCCTGCGCAAGAGATGAGACGACACTCCATCGACTTTCATCCTCCATTTACACATCCGACAAATCCTTCAAGCCTTTCTTCAGTGCGCATGACAACTCCTCCACACTGGAGGAATCTTCCTCCTCAAGCCTTTCTTCAAGATGATGATGTTCCTTGGTTGGGTGAACATGACACTGATATGCAGTTGGACATTGAGGACATGTCATATGAGGAGCTTCTTGAATTAGATGAACGGATTGGCAACGTAGTCACAGGTTTGTTGGATGAAATTATTGCAAGGCAAGTGAAGACAAAAACTTATCTACTTCCTAATAACTCGGAAGAGGTAGCTTCTGAGGAACAAGAAAATGATCTTTGCGTAATATGTCAGGATGAATATAAGAACAAGCAGGAAATTGGAATTCTTCAATGTGGACATGGATATCACACAGATTGTATAAGGACATGGTTACATGAGAAAAATGTTTGTCCCTTATGCAAATCAGAAGCATTGACTCTTGGATAG 1179 0.4207 MDEMSEGNIFWPNMCRVAVRENIDSHCLLNAYNNGMVYGRRAFNGVQHQPIHMAPTPSLEIARNDPQSYHDIARSRNDYRFLHPQYQAQPAQEMRGHFIDFHPSVTLQTNPSSTFLHPQYQAQPAQEMRGHSIDFHPPLTLPTNHSRTFLHPQYQAQPAQEMRGHSIDFHPPLTLPTNPSRTFLHPQYQGQPAQEMRGHSIDFHPPLTLPTNPSRTFLHPQYQAQPAQEMRRHSIDFHPPFTHPTNPSSLSSVRMTTPPHWRNLPPQAFLQDDDVPWLGEHDTDMQLDIEDMSYEELLELDERIGNVVTGLLDEIIARQVKTKTYLLPNNSEEVASEEQENDLCVICQDEYKNKQEIGILQCGHGYHTDCIRTWLHEKNVCPLCKSEALTLG* 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g02027 392 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 321 389 IPR013083 -
Phac11g02027 392 ProSiteProfiles Zinc finger RING-type profile. 344 385 IPR001841 -
Phac11g02027 392 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 67 389 IPR045191 GO:0061630
Phac11g02027 392 SUPERFAMILY RING/U-box 337 388 - -
Phac11g02027 392 CDD RING-H2_RNF24-like 342 388 - -
Phac11g02027 392 SMART ring_2 344 384 IPR001841 -
Phac11g02027 392 Pfam Ring finger domain 343 385 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g02027 Phac-Chr11 30015697 30017480 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac11g02027 284 389 C3H Transcription Factor Family AT2G15530 46.226 2.75e-27 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g02027 K19041 - pvu:PHAVU_011G149000g 388.267