Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g02025 ATGAGAGAACACTCCATCGACTTTCATCCTCCCCTTACACTTCCGACAAATCCTTCAAGAACATTTCTCCATCCGCAGTATCAAGGACAGCCTGCGCAAGAAATGAGAGGACACTCCATCGACTTTCATCCTCCACTTACACTTCCAACAAATCCTTCAAGAACATTTCTCCATCCACAGTATCAAGCACAGCCTGCGCAAGAGATGAGACGACACTCCATCGACTTTCATCCTCCACTTACACTTCCGACAAATCCTTCAAGCCTTTCTTCAGTGCGCATGACAACTCCTCCACACTGGAGGAATCTTCCTCCTCAAGCCTTTCTTCAAGATGATGATGTTCCTTGGTTGGGTGAACATGACACTGATATGCAGTTGGACATTGAGGACATGTCATATGAGGAGCTTCTTGAATTAGATGAACGGATTGGCAACGTAGTCACAGGTTTGTTGGATGAAATTATTGCAAGGCAAGTGAAGACAAAAACTTATCTACTTCCTAATAACTCGGAAGAGGTAGCTTCTGAGGAACAAGAAAATGATCTTTGCGTAATATGTCAGGATGAATATATGAACAAGCAGGAAATTGGAATTCTTCAATGTGGACATGGATATCACGCAGATTGTATAAGGACATGGTTACATGAGAAAAATGTTTGTCCCTTATGCATATCAAAAGCATTGACTCTTGGATAG 696 0.4239 MREHSIDFHPPLTLPTNPSRTFLHPQYQGQPAQEMRGHSIDFHPPLTLPTNPSRTFLHPQYQAQPAQEMRRHSIDFHPPLTLPTNPSSLSSVRMTTPPHWRNLPPQAFLQDDDVPWLGEHDTDMQLDIEDMSYEELLELDERIGNVVTGLLDEIIARQVKTKTYLLPNNSEEVASEEQENDLCVICQDEYMNKQEIGILQCGHGYHADCIRTWLHEKNVCPLCISKALTLG* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g02025 231 SUPERFAMILY RING/U-box 176 225 - -
Phac11g02025 231 MobiDBLite consensus disorder prediction 1 31 - -
Phac11g02025 231 Pfam Ring finger domain 182 223 IPR001841 -
Phac11g02025 231 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 25 228 IPR045191 GO:0061630
Phac11g02025 231 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 160 228 IPR013083 -
Phac11g02025 231 ProSiteProfiles Zinc finger RING-type profile. 183 223 IPR001841 -
Phac11g02025 231 SMART ring_2 183 223 IPR001841 -
Phac11g02025 231 MobiDBLite consensus disorder prediction 12 28 - -
Phac11g02025 231 CDD RING-H2_RNF24-like 181 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g02025 Phac-Chr11 29993714 29994683 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac11g02025 123 228 C3H Transcription Factor Family AT2G15530 44.340 5.89e-27 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g02025 K19041 - pvu:PHAVU_011G149000g 381.333