Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g02022 ATGGGAGTTCCTGTGAGAGACCCTCTTGCACAATTGAGTTTGCCTCCTGGATTTAGGTTTTACCCCACTGATGAAGAGCTTCTGGTTCAATACCTTTGTCGTAAGGTTGCGGGGCACCATTTTTCTCTTCCAATCATTGCTGAAGTTGATTTGTACAAGTTTGATCCATGGGTTCTTCCAGCTAAGGCTGTGTTTGGAGAAAAGGAATGGTATTTTTTCAGCCCGAGGGATAGGAAGTACCCGAATGGTTCAAGACCAAACAGAGTTGCGGGTTCTGGGTATTGGAAAGCCACGGGAACTGACAAGATTATCACCACCCAAGGGAGAAAAGTTGGCATAAAAAAAGCACTTGTGTTCTACGTTGGAAAAGCTCCCAAAGGCTCCAAAACCAATTGGATCATGCACGAGTATCGTGTTCTTGACTCTTCGCGCAAAAACAACCTCGGAACCACCAAGCTTGATGATTGGGTTTTGTGTCGTATATACAAGAAGAACTCGAGTTCGCAAAAGGTTGAGGCAAATTTTTGGGCCAAAGAATGCAGCAATGGATCATCACCTTCTTCATCTTCCCACGTGGAAGACAGGCTGGAATCGTTTCCGGAGATCGATGATCAGTGCTTCACTTTTCCGAGTGTGAACTCGATCAAAACAATGCAACAACAGGACGAGAAATACGGGTTTCAAAACATGGGATCCGAATTTTTTGCTGATTGGGTTACCGCGCCGGATCTTGATTCGATTTCCGAATTCGGGTCAGGTTGCCAAACCCAAGGGATGGTGAATTACGATTACAATGACTTATTTGTCCCTTCTGTGCCGCCGTTCCACATGGAGTTCATGGCAGGGGCACCCACGGAGGAGGAAGTTCAAAGCAGTGTGAGAACCCAACGGGCTGACGGAGACGGATATTTTCAGCAGAACCCGAATGCCCGAAATTTGGCTGGCTCGAACGAATCGCTTGGATTCGGGTTCATGGATCAGCAAATCAGGTTCGGGTTACGGAACTAG 1008 0.4692 MGVPVRDPLAQLSLPPGFRFYPTDEELLVQYLCRKVAGHHFSLPIIAEVDLYKFDPWVLPAKAVFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIITTQGRKVGIKKALVFYVGKAPKGSKTNWIMHEYRVLDSSRKNNLGTTKLDDWVLCRIYKKNSSSQKVEANFWAKECSNGSSPSSSSHVEDRLESFPEIDDQCFTFPSVNSIKTMQQQDEKYGFQNMGSEFFADWVTAPDLDSISEFGSGCQTQGMVNYDYNDLFVPSVPPFHMEFMAGAPTEEEVQSSVRTQRADGDGYFQQNPNARNLAGSNESLGFGFMDQQIRFGLRN* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g02022 335 Gene3D NAC domain 23 170 IPR036093 GO:0003677|GO:0006355
Phac11g02022 335 SUPERFAMILY NAC domain 9 165 IPR036093 GO:0003677|GO:0006355
Phac11g02022 335 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 211 - -
Phac11g02022 335 Pfam No apical meristem (NAM) protein 15 139 IPR003441 GO:0003677|GO:0006355
Phac11g02022 335 ProSiteProfiles NAC domain profile. 14 164 IPR003441 GO:0003677|GO:0006355
Phac11g02022 335 FunFam NAC domain-containing protein 72-like 23 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g02022 Phac-Chr11 29866348 29868264 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac11g02022 1 325 NAC Transcription Factor Family AT1G52890 56.509 1.85e-112 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Phac11g02022 NAM 3.7e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g02022 - - gmx:100811301 584.719