Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g01992 ATGACGCTGCCTCCTCAAACCCAGCTGAATGCACAGTCAACCAACCTATTGCATCTCCCATCCAAGACAGGGGTAATATATTCCTTCATTCACCTTCTCCATCTCTTCCTCTTCTTATTCTTCCTTCACGTGCTTCCTCGCCAAGTGCGTCCCACTTCGCAAACCCCTCCCCCCTTCTCCCCCGCCTCCGCCCCCTCTGCTGCGCCGAAAACTGCCGACGCGAATCATTCTTTTCTCTTCAAGAGGCTCCGGGCGCGACACCTCAGGGATGCCGCGAGAGTCGCCCCCGAACCGAGGAAGAAGGCCAGGGCCGCCGCCGTGGCGGAGGCTGAGAAAGAGAGGGCGAAGAAGGAGAAGGTAGTTGCGAGTTTCGAGGAGTTGGGAGTGAGTGAGGAAGTTATGGAGGCGGTTAGGGAAATGGGGATTGAAGTACCAACTGAGATACAGGGAATTGGCATCCCCGCCGTTTTGGAAGAGAAGAGTGTCGTTTTGGGGTCGCATACTGCCTCTGGCAAAACCCTCGCCTACTTGCTTCCTCTTGTTCAGGTGTTGTTCTGCATTCCTTTTGAAAATGGAAAATTCTCAATATGCCTAGGCGTCCACGAGCTGTTGTGCTGTGTCCTACAAGGGAGTAATCTGAAAAGGTGTACCATGGTAACTGGTGGTGGCCGGATTAGGCCTCAGGAGGATTCCCTTAACAACCCCATTGATATGGTAGTTGGTACCCCTGGCAGGGTTCTTCAGCATATTGAAGAGGGAAACATGGTCTATGGTGACATCAAATACTTGGTATTAGATGAGGCAGACACAATGTTTGATCAGGGTTTTGGTCCTGATATGCGCAAGTTTCTGGGCCCATTAAATTGTCGTGCTTCAAAACCTGATGATCTAGGTTTTCAGACTATCTTGGTAACTGCAACCATGACAAAGGTGTGTGTGTGCACCATAATCTTGTTGGCTACATGCAAATTAAACACTAATGGTTTAGGAGATTATTCTTAA 1002 0.501 MTLPPQTQLNAQSTNLLHLPSKTGVIYSFIHLLHLFLFLFFLHVLPRQVRPTSQTPPPFSPASAPSAAPKTADANHSFLFKRLRARHLRDAARVAPEPRKKARAAAVAEAEKERAKKEKVVASFEELGVSEEVMEAVREMGIEVPTEIQGIGIPAVLEEKSVVLGSHTASGKTLAYLLPLVQVLFCIPFENGKFSICLGVHELLCCVLQGSNLKRCTMVTGGGRIRPQEDSLNNPIDMVVGTPGRVLQHIEEGNMVYGDIKYLVLDEADTMFDQGFGPDMRKFLGPLNCRASKPDDLGFQTILVTATMTKVCVCTIILLATCKLNTNGLGDYS* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g01992 333 Coils Coil 107 127 - -
Phac11g01992 333 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 122 150 IPR014014 GO:0003724
Phac11g01992 333 MobiDBLite consensus disorder prediction 51 70 - -
Phac11g01992 333 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 117 311 IPR027417 -
Phac11g01992 333 CDD DEADc 133 310 - -
Phac11g01992 333 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 153 310 IPR014001 -
Phac11g01992 333 Pfam DEAD/DEAH box helicase 146 310 IPR011545 GO:0003676|GO:0005524
Phac11g01992 333 Gene3D - 84 316 IPR027417 -
Phac11g01992 333 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 73 310 - -
Phac11g01992 333 SMART ultradead3 141 333 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g01992 Phac-Chr11 29144846 29149403 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac11g01992 121 308 Eukaryotic Initiation Factors Gene Family AT3G19760 25.888 7.63e-13 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g01992 - - pvu:PHAVU_004G0886001 325.094