Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g01988 ATGAGAAGAAGAGCCAGAGTGCTTCTTAGTCTCTCTATTTCTCTGCTCTCACCGGTAAAGCATAACCCTTTAGCGAAATCAACACTACCCACTTCTTTATTTCGAAGTAGCATCACATTCTCAACTTCCTCCTCCATAAACCCTCCTATTGAAGAACCAAAGACTTCATCGTCCACGTCCCGAAGGGATTCACTGATTTTAGAACAGTTCAAGCAGAGAAAACTCAAAGGGTCCCCTAAAGACTCAAAGAGTACCCCTCAAGTGGGTTCAACTTCAGTTCCATTAAGTTCAGATGCTTATACTGAGAAGGTGGTCCAAAAGGGTGTGCAGAATGAGGATGAACCCACCATGGTGGTTAGAAGTTTCAAGGAGTTGGGTGTTAGTGAGGAGCTTGTCGAGGTAATGGAGGAGATTGGGGAGTTTATTCCCAGTGAGATACAGTGTGTGGTTATTCCTGCTATCTTGGAAGGGAAGAGTCTGTTGCTGAGTTCACCATCTGAACCTGATAGAACTTTGGCCTTCTTGGTGCCCCTTATTCAGTTGCTAAGACGGGATAGAGAGTTGCTTGGTTCAAATTCAAAACATCCGCAAGCCATTGTGCTTTGTGCTACGGAGGAGAAAGCTGAAAAGTGTTTCAATGCTGCTAAATATATCATCCATAACACAAAATTGAAGTCTGCAAAGGATTGTGCTTCACCAGATGATGGGCAGTCGCAAGCCTCAATTGGCCTAATGATAGGAACTCCTTGTGAGATTCTTCAATATATTGAAGAGGAGAGCATTGTTCCTTCTGAAATAAGATACTTGGTGTTGGATGAGGCAGATTGCATGCTTGGTAGTGGCCTTGGTCCTGAAATCCATAAAATTCTCATACCATTACAAGATCATGAATCAAAATCTGCTGTCAAAAGATTACAAACTATTTTGGCCATTTCAACCATGGCTGAGGTTTTGGGTGAACAATCCCCTGTTGTAAAGTATCTTGAGTGCCATCATGCAGGGAATATTTCTGCAATGTCTTTAGAAATGGAACAAAGTGAAGTCTTTCATTTCACAGAGTCTCTTCATGCTCTTAAGAAAAAAATAGCAGAGGCCATGGATTCCCTTTTGCAACAAGAATAA 1122 0.4207 MRRRARVLLSLSISLLSPVKHNPLAKSTLPTSLFRSSITFSTSSSINPPIEEPKTSSSTSRRDSLILEQFKQRKLKGSPKDSKSTPQVGSTSVPLSSDAYTEKVVQKGVQNEDEPTMVVRSFKELGVSEELVEVMEEIGEFIPSEIQCVVIPAILEGKSLLLSSPSEPDRTLAFLVPLIQLLRRDRELLGSNSKHPQAIVLCATEEKAEKCFNAAKYIIHNTKLKSAKDCASPDDGQSQASIGLMIGTPCEILQYIEEESIVPSEIRYLVLDEADCMLGSGLGPEIHKILIPLQDHESKSAVKRLQTILAISTMAEVLGEQSPVVKYLECHHAGNISAMSLEMEQSEVFHFTESLHALKKKIAEAMDSLLQQE* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g01988 373 SMART poly_2 310 372 IPR002004 GO:0003723
Phac11g01988 373 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 120 148 IPR014014 GO:0003724
Phac11g01988 373 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 151 332 IPR014001 -
Phac11g01988 373 MobiDBLite consensus disorder prediction 81 95 - -
Phac11g01988 373 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 258 373 IPR002004 GO:0003723
Phac11g01988 373 MobiDBLite consensus disorder prediction 42 95 - -
Phac11g01988 373 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 55 315 - -
Phac11g01988 373 MobiDBLite consensus disorder prediction 66 80 - -
Phac11g01988 373 Gene3D - 78 319 IPR027417 -
Phac11g01988 373 MobiDBLite consensus disorder prediction 42 65 - -
Phac11g01988 373 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 113 314 IPR027417 -
Phac11g01988 373 Gene3D - 320 372 - -
Phac11g01988 373 Pfam DEAD/DEAH box helicase 145 313 IPR011545 GO:0003676|GO:0005524
Phac11g01988 373 SUPERFAMILY PABC (PABP) domain 314 368 IPR036053 GO:0003723
Phac11g01988 373 Pfam Poly-adenylate binding protein, unique domain 323 367 IPR002004 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g01988 Phac-Chr11 29096536 29102046 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac11g01988 119 289 Eukaryotic Initiation Factors Gene Family AT3G19760 22.857 5.60e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g01988 - - vra:106768009 624.394