Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g01937 ATGGTTTCCCGGGAAAACACCAATTGGCTCTTCGATTACGGCTTGATCGACGATATTCCTGTCCCCGATGCCTCCTTCACCGTCCCTTCCTCCGCCTTCACATGGCCCCCTAACGCCTTGAACGCCACTTCCAATGTCGGTGTTGAAATTGATGGCTCACTGGCGGATTCTGATGGTCTCAAGGAGTCTGGCTCAAAGAAAAGGGTTAGATCTGAGACATGTGCTGCTGCTACTAGCTCCAAGGCATGTCGGGAGAAGTTGCGAAGAGATAAGCTTAACGACAAGTTTGTTGAATTGGGATCCATTTTGGAGCCTGGAAGGCCTGCGAAAACTGACAAGGCTGCTATCCTGATTGATGCTGTCCGAATGGTGACACAGTTACGGGGTGAAGCGCAGAAGTTGAAAGACTCTAATCAGGGTCTTCAAGAAAAGATTAAAGAGTTAAAGGCTGAGAAGAATGAACTTCGAGATGAGAAACAGATGCTCAAGGCAGAGAAGGAGAAGTTGGAGCAGCAGCTGAAATCTTTGAATGCACAACCCAATTTCATGCCTCCACCTGCTGCTATCCCTGCCGCATTTGCGGCGCAAGGCCAAGCCCATGGAAACAAGTTGGTACCTTTTATTAGTTATCCAGGAGTTGCAATGTGGCAATTCATGCCGCCAGCTGCAGTGGATACTTCACAGGATCACGTACTCCGTCCACCAGTTGCCTAA 714 0.4916 MVSRENTNWLFDYGLIDDIPVPDASFTVPSSAFTWPPNALNATSNVGVEIDGSLADSDGLKESGSKKRVRSETCAAATSSKACREKLRRDKLNDKFVELGSILEPGRPAKTDKAAILIDAVRMVTQLRGEAQKLKDSNQGLQEKIKELKAEKNELRDEKQMLKAEKEKLEQQLKSLNAQPNFMPPPAAIPAAFAAQGQAHGNKLVPFISYPGVAMWQFMPPAAVDTSQDHVLRPPVA* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g01937 237 CDD bHLH_AtILR3_like 81 156 - -
Phac11g01937 237 Coils Coil 124 179 - -
Phac11g01937 237 Gene3D arf6 gtpase in complex with a specific effector, jip4 126 180 - -
Phac11g01937 237 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 78 146 IPR036638 GO:0046983
Phac11g01937 237 PANTHER BHLH TRANSCRIPTION FACTOR 3 237 IPR044818 GO:0003700|GO:0006355|GO:0006879|GO:0046983
Phac11g01937 237 Pfam Helix-loop-helix DNA-binding domain 80 127 IPR011598 GO:0046983
Phac11g01937 237 Gene3D - 66 125 IPR036638 GO:0046983
Phac11g01937 237 FunFam Transcription factor bHLH34 66 125 - -
Phac11g01937 237 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 76 127 IPR011598 GO:0046983
Phac11g01937 237 SMART finulus 82 133 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g01937 Phac-Chr11 27913909 27918119 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac11g01937 1 237 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 69.583 8.81e-111 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phac11g01937 HLH 7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g01937 - - gmx:100788858 405.601