Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g01927 ATGGAGTTCGCTTCTTCTTATCCATCATCATCATCGTCTTCATCCTTCTTAAAATCAGAACCCCAGTTCAGATACGATGTGTTTATCAACTTTTGGGGAGAAGACATCGGTAAAAAGTTCGTTTCCCATCTCCATTCTCTCCTTTTACAAGCTCAAGTCAAAACTTTGATTAACGAGGGGAATCTGCAGGAGGGAATGGAGCTGGAAGAACACATGCGAGCAATAGCAGCCTCTAAGATTGCAATAATCGTTTTCTCCAAATCATACACTGAATCTACCTGCTGTCTTCTTGAGCTTGAAAAAATCATTGAATGCCACCAAACTTTTGGTCAAATATTTCTTCCCATATTTTACGAGATTGACCCATTGGATGTACGTTATCAGAAGGATGATTTCGGAAAAGCGTTGGAAGAAGCTGCACACAAAAGCTATTCTGGAGAGCAACTGGAGTATGCATTGTCCAGATGGAGCCGTGCACTCACCACAGCTGCAGGTATCAGTGGTTGGGATGTCAGAGATTTCAGGCATGATGCTGAACTTGTGGACAAAGTTATTTTCCGCATTCTTGAATTGCTGGACTATGAAGACTTGTCTAATACCCAATTTCCTGTTGGATTAGACACCCGCGTGGAAAAGGTAATTGAATGTATTGAAAATCATTCCACCAAAGTCTGTATGATAGGAATATGGGGAATGGCAGGATCGGGTAAAACTACCATAGCCAAAGCCATCTATAATCGAATTTATCGTCCATTCATCGGTAAGAGTTTTATTGAAATTATTAGAGAAGTTTGGGATCGAATAGATAGAAGGCATGTTGATTTGCAAGAAAATCTTCTTTATGGTGTCCTAAAATCCAACCTCGAGCTGGAAAGCGTTGGGATGGGAAGAACTATGATCCAGAACAGACTTTCTCGAAAAAAGTTGCTGATTGTGCTTGATGATGTGAATGACTTTGACGAAATAGAAAACCTATGCGGGAATCGTGAATGGTTCGGTCAAGGAACTGTGATAATCATTACAACTAGAGAGGTTGACGTACTGAACCGACTCAAAGTTGATTATGTTTATAGAATGGATGTTATGAATGAAAATGAGTCCCTTGAGCTTTTCAGTTGGCATGCCTTTAGAAAAGCAAAACCAATAAAAGACTTTAATGAACTTGCAAGAAGCATGGTTGCTTGTTGTGGAGGACTACCACTAACTCTTAAGGTCCTTGGTTCCTCTTTCTGGGAAACGACAGTGGAAGAGTGGGAAATTGAATCGTCAAAACTAAAAATAATTCCCAAGCTTCAAGTTCAGAAAATATTGAGATTAAATTTTGACGGTTTGTGCGATGACATGGAAAAGGATATATTTCTTGATGTATGTTGTTTCTTTATTGGTAAAGATAGAGGCTATGTGACGGAGATATTAAATGGCTGTGGACTACATGCTGATATTGGAATAAGAGTTCTTATAGAGCGTGGTCTCTTAAAAGTTGAAAGGAACAACAAACTTGAGATGCATCCTTTGTTAGGAGTCATGGGAAGAGAAATTATTAGTCAAAGTTGGCCAAAGAAACCGGGGAAAAGGAATCGGTTAATTTTTCAGGATGATGTAAAAGATGTACTGAAAAAGAATACTGGGACAGAAGTTACCCAGGGATTGTCCCTGAAACTGCATTCAACCAGCAGAGATTGCTTCAAAGCTCGTGCTTTCAAGAAAATGAAGAGATTAAGACTGCTACAACTGGATCATGTACAACTTACTGGAGATTATGGGTACTTTTCTAAACAATTGAGATGGATTTCTTGGCAAGGGTTCCGTTCTGAGTACGTACCAAATAACTTTCATATGGAAAATGTAATTGCAATTGATTTAAAACATAGTCATCTTCAACTCGTCTGGAAACAACCCCAGGTTTTAAAGTGGCTAAAATTCCTTAATCTTAGTCACTCCAAGTTTTTGAGAGAAACACCTGACTTTTCAGGACTACCAAGTCTTGAAAAGCTCATTCTAAAAGATTGCCCAAGTTTGTGCAAGGTACACCAATCCATTGGAGATCTCCGCAATCTACTACTGATAAATTTGAAAGACTGCACAAGTCTAAGCAATCTCCCCAGAGAGGTATATAAGTTGAAATCTTTAAGAACTTTCATTCTCTCTGGTTGTTTGAAAATTGACATATTGGAAGAAGATATAGCGCTGATCAAATCCTTGATAACTCTAGTAGCTGAAAATACAGCTGTGAAACAAGTGCCCTTTTCAATTGTAAGTTCAAAAAGCATTGGATATATATCCCTACGTGGATTTGAAGGATTGTCAACTAGTGTTTTTCCTTCTATCATTCGGTCTTGGATGTCACCAACACTGAATCCCCAATCTTTTGTTAGTCCGTTTTGCATGGATATGGAGAATAATAATTGGCGTGACCTTGCGCCATTGCATAGCAGCCTTGCAAATCTTCGCAGTATTTTGGTTCAAGGGGACACGGAGTTTCAACTATCTAATGAAGTGAAAACAATTCTTGTTGAATATGGTGTAAATTTTACAGAATCAAGAATTTCAAAGCATCACTTGAGGTTTTCTTTGATTGGTGTTGGAAGTTACAATGAATTTCTCAATACTCTCAGCAATAGCGTTTCTGAGGGATTGGCAAGCAGTGAGTCTTGTGATGTTTTTCTTCCAGGTGACAACTATCCTTATTGGTTGGCCAATGTGGGTGAGGGACATTCAGTTTGTTTCAATGTGCCTCATGATTGTGACATGAAGGGAATGGCTTTGTGTGTTGTTTATTTATCAACCCCTGAAATCGTGGCAACTGAATGTCTTACAAGTGTCTTAGTGGTTAATTACACAAAGTGCACATTACATATGCACAGGCATGGCAGAGTAATTTCCTTCAATGATGAAGATTGGCATGGCATAATGTCAAATTTAGGATCTGGAGACAAGGTGGAGATTTTCGTGAATTTTGGTCATGGATTGGTGGTCAAGAACACAGCTGTCTATTTGATATGTGGTGAATCAAATGACTTGGAAAAAGAACCTGTTGAGTAG 3042 0.3879 MEFASSYPSSSSSSSFLKSEPQFRYDVFINFWGEDIGKKFVSHLHSLLLQAQVKTLINEGNLQEGMELEEHMRAIAASKIAIIVFSKSYTESTCCLLELEKIIECHQTFGQIFLPIFYEIDPLDVRYQKDDFGKALEEAAHKSYSGEQLEYALSRWSRALTTAAGISGWDVRDFRHDAELVDKVIFRILELLDYEDLSNTQFPVGLDTRVEKVIECIENHSTKVCMIGIWGMAGSGKTTIAKAIYNRIYRPFIGKSFIEIIREVWDRIDRRHVDLQENLLYGVLKSNLELESVGMGRTMIQNRLSRKKLLIVLDDVNDFDEIENLCGNREWFGQGTVIIITTREVDVLNRLKVDYVYRMDVMNENESLELFSWHAFRKAKPIKDFNELARSMVACCGGLPLTLKVLGSSFWETTVEEWEIESSKLKIIPKLQVQKILRLNFDGLCDDMEKDIFLDVCCFFIGKDRGYVTEILNGCGLHADIGIRVLIERGLLKVERNNKLEMHPLLGVMGREIISQSWPKKPGKRNRLIFQDDVKDVLKKNTGTEVTQGLSLKLHSTSRDCFKARAFKKMKRLRLLQLDHVQLTGDYGYFSKQLRWISWQGFRSEYVPNNFHMENVIAIDLKHSHLQLVWKQPQVLKWLKFLNLSHSKFLRETPDFSGLPSLEKLILKDCPSLCKVHQSIGDLRNLLLINLKDCTSLSNLPREVYKLKSLRTFILSGCLKIDILEEDIALIKSLITLVAENTAVKQVPFSIVSSKSIGYISLRGFEGLSTSVFPSIIRSWMSPTLNPQSFVSPFCMDMENNNWRDLAPLHSSLANLRSILVQGDTEFQLSNEVKTILVEYGVNFTESRISKHHLRFSLIGVGSYNEFLNTLSNSVSEGLASSESCDVFLPGDNYPYWLANVGEGHSVCFNVPHDCDMKGMALCVVYLSTPEIVATECLTSVLVVNYTKCTLHMHRHGRVISFNDEDWHGIMSNLGSGDKVEIFVNFGHGLVVKNTAVYLICGESNDLEKEPVE* 1014
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g01927 1013 SUPERFAMILY Toll/Interleukin receptor TIR domain 20 169 IPR035897 -
Phac11g01927 1013 SUPERFAMILY L domain-like 554 820 - -
Phac11g01927 1013 Gene3D Ribonuclease Inhibitor 541 839 IPR032675 -
Phac11g01927 1013 Pfam TIR domain 25 188 IPR000157 GO:0007165
Phac11g01927 1013 SMART till_3 24 166 IPR000157 GO:0007165
Phac11g01927 1013 Gene3D - 19 195 IPR035897 -
Phac11g01927 1013 Pfam NB-ARC domain 208 426 IPR002182 GO:0043531
Phac11g01927 1013 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 202 455 IPR027417 -
Phac11g01927 1013 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 25 745 IPR044974 GO:0006952
Phac11g01927 1013 Gene3D - 196 356 IPR027417 -
Phac11g01927 1013 SUPERFAMILY "Winged helix" DNA-binding domain 432 518 IPR036390 -
Phac11g01927 1013 Gene3D - 361 445 IPR042197 -
Phac11g01927 1013 PRINTS Disease resistance protein signature 396 410 - -
Phac11g01927 1013 PRINTS Disease resistance protein signature 303 317 - -
Phac11g01927 1013 PRINTS Disease resistance protein signature 681 697 - -
Phac11g01927 1013 PRINTS Disease resistance protein signature 226 241 - -
Phac11g01927 1013 ProSiteProfiles TIR domain profile. 23 192 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g01927 Phac-Chr11 27680156 27693689 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac11g01927 4 751 WRKY Transcription Factor Family AT4G12020 29.129 3.44e-78 279
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g01927 - - pvu:PHAVU_010G027900g 1737.24