Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g01913 ATGTTAATGCCAGAAGCAAATATTGTGGAAAAAAAACCTCATTCATCCTCTAATAATACCTCCAAATATAACCCCAACAAAACTTTGGTTAGAAAGAGAGGGGTTGGGACAAATGTTGTTAAGGTGTCTAAGAAATCATCTCCAAGTATATGCAAATATTGGACCAACAACTGTGTGTACGGTGAACAATGCCTGAATTTACATTCATGGTTTCATGGTGATGGATTTTCCACATTAACAAAGCTTCACCAACACAAAAAGGCTATCACCGGAATTACACTTCTGGCTGGAACCAACAAACTTTATTCTGGAAGCAATGATGGAACCGTTCGGATATGGGATTACCATACAGGTCAATGTGTTAAAGTCCTAAATTTTGGCACCCAAGTTAACTCTTTGATAAGTGAGGGGGCATGGGTTTTTGTTGGTTTGAACAATGTTATCAAGGCTTTGAATACTGAAACCAATTTGGAGTTTACTCTTGATGGACCCAAAGGAAGGATCCTTCACATGACTGTTGGTAACAACATCCTTTTTGCCGGGGCAGAGGATGGTGTCATTACTGCCTGGAGAGAAAGCTCTGAAGCTAAGTCTTCTTTTGAATTAGTTGACTCACTAACTGGTCACACTAAATCTGTGGTTTGCCTAACTGTTGGGCGCAAGATGTTGTACTCCGGATCCATGGACCAAAGCATAAAGGTCTGGGACATGGATACATTACAATGTACAATGACACTCAAAGAACATAATGATGTAGTCACGTCCCTTATTTGTTGGGACGAATTTTCGCTGTCAAGTTCATCTGATGGAACAATTAAGATATGGGCATGCATGGAAGAAGGAACTTTGACTGTGACAATTCAGTACGCATGTACGGATTGCCAACGTAAATTTTCAGAGAGAGGTCTTTTATATGCTAAGAAAGACATTGCATCTTTCGAATTAGGCCCTAATGGACTTTTCTTCATTGGCGATGGGACTGGTTTACTTAGTGTATGGAAGTGGAATGAGTTACCTACAATGACATCCAATTGA 1035 0.399 MLMPEANIVEKKPHSSSNNTSKYNPNKTLVRKRGVGTNVVKVSKKSSPSICKYWTNNCVYGEQCLNLHSWFHGDGFSTLTKLHQHKKAITGITLLAGTNKLYSGSNDGTVRIWDYHTGQCVKVLNFGTQVNSLISEGAWVFVGLNNVIKALNTETNLEFTLDGPKGRILHMTVGNNILFAGAEDGVITAWRESSEAKSSFELVDSLTGHTKSVVCLTVGRKMLYSGSMDQSIKVWDMDTLQCTMTLKEHNDVVTSLICWDEFSLSSSSDGTIKIWACMEEGTLTVTIQYACTDCQRKFSERGLLYAKKDIASFELGPNGLFFIGDGTGLLSVWKWNELPTMTSN* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g01913 344 ProSiteProfiles Zinc finger C3H1-type profile. 45 71 IPR000571 GO:0046872
Phac11g01913 344 PANTHER - 16 286 IPR044715 -
Phac11g01913 344 SUPERFAMILY WD40 repeat-like 74 337 IPR036322 GO:0005515
Phac11g01913 344 MobiDBLite consensus disorder prediction 11 26 - -
Phac11g01913 344 ProSiteProfiles Trp-Asp (WD) repeats profile. 82 123 IPR001680 GO:0005515
Phac11g01913 344 Pfam WD domain, G-beta repeat 241 275 IPR001680 GO:0005515
Phac11g01913 344 Pfam WD domain, G-beta repeat 201 236 IPR001680 GO:0005515
Phac11g01913 344 Pfam WD domain, G-beta repeat 78 114 IPR001680 GO:0005515
Phac11g01913 344 ProSitePatterns Trp-Asp (WD) repeats signature. 223 237 IPR019775 -
Phac11g01913 344 Gene3D - 43 137 IPR015943 GO:0005515
Phac11g01913 344 MobiDBLite consensus disorder prediction 1 26 - -
Phac11g01913 344 PRINTS G protein beta WD-40 repeat signature 223 237 IPR020472 -
Phac11g01913 344 PRINTS G protein beta WD-40 repeat signature 263 277 IPR020472 -
Phac11g01913 344 PRINTS G protein beta WD-40 repeat signature 101 115 IPR020472 -
Phac11g01913 344 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 206 239 - -
Phac11g01913 344 ProSiteProfiles Trp-Asp (WD) repeats profile. 206 245 IPR001680 GO:0005515
Phac11g01913 344 Gene3D - 138 342 IPR015943 GO:0005515
Phac11g01913 344 SMART WD40_4 297 334 IPR001680 GO:0005515
Phac11g01913 344 SMART WD40_4 239 276 IPR001680 GO:0005515
Phac11g01913 344 SMART WD40_4 199 236 IPR001680 GO:0005515
Phac11g01913 344 SMART WD40_4 75 114 IPR001680 GO:0005515
Phac11g01913 344 SMART WD40_4 154 191 IPR001680 GO:0005515
Phac11g01913 344 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 82 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g01913 Phac-Chr11 27460502 27462403 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac11g01913 70 245 Eukaryotic Initiation Factors Gene Family AT2G46290 25.381 6.07e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g01913 - - gmx:100799617 460.685