Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g01902 ATGGATGTAAAGTTTAGCAGAATGGATAAAGAAATTGAAACATCCTCACTAAATGTTAATGCCAGAAGCAAATGTTGTGGAAAAAAACCTCATTCATCCTCTAATAATACCTCCAAATATAACCCCAAGAAAAATTTGGTTACAAAGAGAGGAGATGGGACAAATGTTGTTAAGGTGTCTAAGAAGTCATCTCCAAGTATATGCAAATATTGGACCAACAACAACTGTGTGTATGGTGAACAATGCCTGAATTTACATTCATGGTTTTATGGTGATGGGTTTTCCCCATTAACAAAACTTCACCAACACAAAAAGGCTATCAACGGAATTACGCTTCTGGCTGGAACCAACAAACTTTATTCTGGAAGCACCGATGGAACCGTTCGGATATGGGATTGCCATACAGGTCAATGTCTTAAAGTCCTAAATTTTGGCACCCAAGTTAACTCTTTGATAAGTGAGGGGCCATGGGTTTTTGTTGGTTTGAACAATGCTATCAAGGCTTTGAATACTGAGACCAATTTGGAGTTTACTCTTGATGGACCCAAAGGAAGGATCCTTCACATGAATTTTGGTAACAACATCCTTTTTGCCGGGGCAGAGGATGGTGTCATTACCGCCTGGAGAGAAAGCTCTGAAGCTAAGTCTCCTTTTGAATTAGTTGCCTCACTAACTGGTCACACTAAATCTGTGGTTTGCCTAACTGTTGGACGCAAGATGTTGTACTCCGGATCCATGGACCAAAGCATAAAGGTCTGGGACATGGATAAATTACAATGTACAATGACACTCAATGAACATAATGATGTAGTCACATCCCTTATTTGTTGGGATGAATTTTTGCTGTCAAGTTCATCTGATGGCACAATTAAGATCTGGGCATGCATGGAAAAAGGAACTCTGACTGTGGGCATTGTCTCACTTTTTGGGATGCCAAATGCAAAAGGCAAGCCAATATTGTTTTCCTCTTGTAAAGACAATTCAGTACGCATGTATGAATTGCCATCATTTTCAGAGAGGGGTCTTCTATATGCTAAGAAAGACATTGCATCTTTTGAGTTAGGCACTGATGGACTCTTCTTCACTGGCGATGAGACTGGTTTGCTTAGTGTATGGAAGTGGAATGAGTTACCTAAGATGACATCTGATTGA 1152 0.3993 MDVKFSRMDKEIETSSLNVNARSKCCGKKPHSSSNNTSKYNPKKNLVTKRGDGTNVVKVSKKSSPSICKYWTNNNCVYGEQCLNLHSWFYGDGFSPLTKLHQHKKAINGITLLAGTNKLYSGSTDGTVRIWDCHTGQCLKVLNFGTQVNSLISEGPWVFVGLNNAIKALNTETNLEFTLDGPKGRILHMNFGNNILFAGAEDGVITAWRESSEAKSPFELVASLTGHTKSVVCLTVGRKMLYSGSMDQSIKVWDMDKLQCTMTLNEHNDVVTSLICWDEFLLSSSSDGTIKIWACMEKGTLTVGIVSLFGMPNAKGKPILFSSCKDNSVRMYELPSFSERGLLYAKKDIASFELGTDGLFFTGDETGLLSVWKWNELPKMTSD* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g01902 383 SMART WD40_4 172 209 IPR001680 GO:0005515
Phac11g01902 383 SMART WD40_4 217 254 IPR001680 GO:0005515
Phac11g01902 383 SMART WD40_4 336 373 IPR001680 GO:0005515
Phac11g01902 383 SMART WD40_4 93 132 IPR001680 GO:0005515
Phac11g01902 383 SMART WD40_4 257 294 IPR001680 GO:0005515
Phac11g01902 383 ProSitePatterns Trp-Asp (WD) repeats signature. 241 255 IPR019775 -
Phac11g01902 383 MobiDBLite consensus disorder prediction 22 46 - -
Phac11g01902 383 ProSiteProfiles Trp-Asp (WD) repeats profile. 264 293 IPR001680 GO:0005515
Phac11g01902 383 MobiDBLite consensus disorder prediction 22 44 - -
Phac11g01902 383 ProSiteProfiles Trp-Asp (WD) repeats profile. 100 141 IPR001680 GO:0005515
Phac11g01902 383 Gene3D - 18 175 IPR015943 GO:0005515
Phac11g01902 383 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 224 256 - -
Phac11g01902 383 ProSiteProfiles Zinc finger C3H1-type profile. 62 89 IPR000571 GO:0046872
Phac11g01902 383 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 100 132 - -
Phac11g01902 383 Pfam WD domain, G-beta repeat 259 293 IPR001680 GO:0005515
Phac11g01902 383 Pfam WD domain, G-beta repeat 95 132 IPR001680 GO:0005515
Phac11g01902 383 Pfam WD domain, G-beta repeat 219 254 IPR001680 GO:0005515
Phac11g01902 383 ProSiteProfiles Trp-Asp (WD) repeats profile. 224 263 IPR001680 GO:0005515
Phac11g01902 383 PANTHER - 18 379 IPR044715 -
Phac11g01902 383 PRINTS G protein beta WD-40 repeat signature 281 295 IPR020472 -
Phac11g01902 383 PRINTS G protein beta WD-40 repeat signature 119 133 IPR020472 -
Phac11g01902 383 PRINTS G protein beta WD-40 repeat signature 241 255 IPR020472 -
Phac11g01902 383 SUPERFAMILY WD40 repeat-like 73 374 IPR036322 GO:0005515
Phac11g01902 383 Gene3D - 192 381 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g01902 Phac-Chr11 27175582 27177608 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac11g01902 66 263 Eukaryotic Initiation Factors Gene Family AT2G46290 24.324 7.17e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g01902 - - gmx:100787799 556.599