Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g01901 ATGGATGTAAAGTTTAGCAGAATGGATAAAGAAATTGGTGGGACAACTTGTGTCTACTGGCGAGCTGGGAGATGCAACAGAAATCCATGCAAATTTCTACACAGAGAAACATCCTCACTACATGTTAATGCCAGAAGCAAATGTTGTGGAAAAAAACCTCATTCATCCTCTAAAAATATCTCCAAATATAACCCCAAGAAAAATTTGGTTACAAAGAGAGGAGATGGGACAAATGTTGTTAAGGTGTCTAAGAAGTCATCTCCAAGGATATGCAAATATTGGACCAACAACAACTGTGTGTACGGTGAACAATGCCTGAATTTACATTCATGGTTTCATGGTGATGGGTTTTCCCCATTAACAAAACTTCACCAACACAAAAAGGCTATCACCGAAATTACGCTTCTGGCTGGAACCAACAAACTTTATTCTGGAAGCACCGATGGAACCGTTCGGATATGGGATTGCCATACAGGTCAATGTCTTAAAGTCCTAAATTTTGGCACCCAAGTTAACTCTTTGATAAGTGAGGGGCCATGGGTTTTTGTTGGTTTGAACAATGCTATCAAGGCTTTGAATACTGAGACCAATTTGGAGTTTACTCTTGATGGACCCAAAGGAAGGATCCTTCACATGACTTTTGGTAACAACATCCTTTTTGCCGGGGCAGAGGATGGTGTCATTACTGCCTGGAGAGAAAGCTCTGAAGCTAAGTCTCCTTTTGAATTAGTTGCCTCACTAACTGGTCACACTAAATCTGTGGTTTGTCTAACTGTTGGACGCAAGATGTTGTACTCCGGATCCATGGACCAAAGCATAAAGGTCTGGGACATGGATAAATTACAATGTACAATGACACTCAATGAACATAATGATGTAGTCACATCCCTTATTTGTTGGGACGAATTTTTGCTGTCAAGTTCATCTGATGGCACGATTAAGATCTGGGCATGCATGGAAGAAGGAACTCTGACTGTGGCATATACACACACCGAACGAAGTGGCATTGTCTCACTTTTTGGGATGCCTAATGCAAAAGGCAAGCCAATATTGTTTTCCTCTTGTAAAGACAATTCAGTACGCATGTATGAATTGCCATCATTTTCAGAGAGGGGTCTTTTATATGCTAAGAAAGACATTGCATCTTTTGAGTTAGGCCTTGATGGACTCTTCTTCACTGGCGATGAGACTGGTTTGCTTAGTGTATGGAAGTGGAATGAGTTACCTAAGATGACATCCGATTGA 1245 0.4088 MDVKFSRMDKEIGGTTCVYWRAGRCNRNPCKFLHRETSSLHVNARSKCCGKKPHSSSKNISKYNPKKNLVTKRGDGTNVVKVSKKSSPRICKYWTNNNCVYGEQCLNLHSWFHGDGFSPLTKLHQHKKAITEITLLAGTNKLYSGSTDGTVRIWDCHTGQCLKVLNFGTQVNSLISEGPWVFVGLNNAIKALNTETNLEFTLDGPKGRILHMTFGNNILFAGAEDGVITAWRESSEAKSPFELVASLTGHTKSVVCLTVGRKMLYSGSMDQSIKVWDMDKLQCTMTLNEHNDVVTSLICWDEFLLSSSSDGTIKIWACMEEGTLTVAYTHTERSGIVSLFGMPNAKGKPILFSSCKDNSVRMYELPSFSERGLLYAKKDIASFELGLDGLFFTGDETGLLSVWKWNELPKMTSD* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g01901 414 ProSiteProfiles Trp-Asp (WD) repeats profile. 123 164 IPR001680 GO:0005515
Phac11g01901 414 ProSiteProfiles Trp-Asp (WD) repeats profile. 247 286 IPR001680 GO:0005515
Phac11g01901 414 SUPERFAMILY CCCH zinc finger 87 110 IPR036855 GO:0046872
Phac11g01901 414 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 247 279 - -
Phac11g01901 414 SUPERFAMILY WD40 repeat-like 109 405 IPR036322 GO:0005515
Phac11g01901 414 SMART WD40_4 321 364 IPR001680 GO:0005515
Phac11g01901 414 SMART WD40_4 367 404 IPR001680 GO:0005515
Phac11g01901 414 SMART WD40_4 116 155 IPR001680 GO:0005515
Phac11g01901 414 SMART WD40_4 240 277 IPR001680 GO:0005515
Phac11g01901 414 SMART WD40_4 280 317 IPR001680 GO:0005515
Phac11g01901 414 SMART WD40_4 195 232 IPR001680 GO:0005515
Phac11g01901 414 ProSitePatterns Trp-Asp (WD) repeats signature. 264 278 IPR019775 -
Phac11g01901 414 ProSiteProfiles Zinc finger C3H1-type profile. 85 112 IPR000571 GO:0046872
Phac11g01901 414 SMART c3hfinal6 85 111 IPR000571 GO:0046872
Phac11g01901 414 SMART c3hfinal6 11 36 IPR000571 GO:0046872
Phac11g01901 414 Pfam WD domain, G-beta repeat 282 316 IPR001680 GO:0005515
Phac11g01901 414 Pfam WD domain, G-beta repeat 242 277 IPR001680 GO:0005515
Phac11g01901 414 Pfam WD domain, G-beta repeat 118 155 IPR001680 GO:0005515
Phac11g01901 414 PRINTS G protein beta WD-40 repeat signature 142 156 IPR020472 -
Phac11g01901 414 PRINTS G protein beta WD-40 repeat signature 304 318 IPR020472 -
Phac11g01901 414 PRINTS G protein beta WD-40 repeat signature 264 278 IPR020472 -
Phac11g01901 414 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 123 155 - -
Phac11g01901 414 ProSiteProfiles Trp-Asp (WD) repeats profile. 287 316 IPR001680 GO:0005515
Phac11g01901 414 Gene3D - 112 240 IPR015943 GO:0005515
Phac11g01901 414 Gene3D - 9 111 - -
Phac11g01901 414 Gene3D - 241 412 IPR015943 GO:0005515
Phac11g01901 414 ProSiteProfiles Zinc finger C3H1-type profile. 16 37 IPR000571 GO:0046872
Phac11g01901 414 PANTHER - 48 410 IPR044715 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g01901 Phac-Chr11 27156191 27158215 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac11g01901 92 286 Eukaryotic Initiation Factors Gene Family AT2G46290 24.658 7.42e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g01901 - - gmx:100787799 637.106