Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g01899 ATGGATGTAAAGTTTAGCAGAATGGATAAAGAAATTGGTGGGACAACTTGTGTCTACTGGCGAGCTGGGAGATGCAACAGAAATCCATGCAAATTTCTGCACAGAGAAACATCCTCACTAAATGTTAATGCCAGAAGCAAATGTTGTGGAAAAAAACCTCATTCATCCTCTAATAATACCTCCAAATATAACCCCAAGAAAAATTTGGTTACAAAGAGAGGAGATGGGACAAATGTTGTTAAGGTGTCTAAGAAGTCATCTCCAAGTATATGCAAATATTGGACCAACAACAACTGTGTGTATGATGAACAATGCCTGAATTTACATTCATGGTTTCATGGTGATGGGTTTTCCCCATTAACAAAACTTCACCAACACAAAAAGGCTATCAACGAAATTACGCTTCTGGCTGGAACCAACAAACTTTATTCTGGAAGCACCGATGGAACCGTTCGGATATGGGATTGCCATACAGGTCAATGTCTTAAAGTCCTAAATTTTGGCACCCAAGTTAACTCTTTGATAAGTGAGGGGCCATGGGTTTTTGTTGGTTTGAACAATGCTATCAAGGCTTTGAATACTGAGACCAATTTGGAGTTTACTCTTGATGGACCCAAAGGAAGGATCCTTCACATGACTTTTGGTAACAACATCCTTTTTGCCGGGGCAGAGGATGGTGTCATTACTGCCTGGAGAGAAAGCTCTGAAGCTAAGTCTCCTTTTGAATTAGTTGCCTCACTAACTGGTCACACTAAATCTGTGGTTTGCCTAACTGTTGGACGCAAGATGTTGTACTCCGGATCCATGGACCAAAGCATAAAGGTCTGGGACATGGATAAATTACAATGTACAATGACACTCAATGAACATAATGATGTAGTCACATCCCTTATTTGTTGGGACGAATTTTTGCTGTCAAGTTCATCTGATGGCACAATTAAGATCTGGGCATGCATGGAAAAAGGAACTCTGACTGTGGGCATTGTCTCACTTTTTGGGATGCCAAATGCAAAAGGCAAGCCAATATTGTTTTCCTCTTGTAAAGACAATTCAGTACGCATGTATGAATTGCCATCATTTTCAGAGAGGGGTCTTCTATATGCTAAGAAAGACATTGCATCTTTTGAGTTAGGCACTGATGGACTCTTCTTCACTGGCGATGAGACTGGTTTGCTTAGTGTATGGAAGTGGAATGAGTTACCTAAGATGACATCTGATTGA 1221 0.4046 MDVKFSRMDKEIGGTTCVYWRAGRCNRNPCKFLHRETSSLNVNARSKCCGKKPHSSSNNTSKYNPKKNLVTKRGDGTNVVKVSKKSSPSICKYWTNNNCVYDEQCLNLHSWFHGDGFSPLTKLHQHKKAINEITLLAGTNKLYSGSTDGTVRIWDCHTGQCLKVLNFGTQVNSLISEGPWVFVGLNNAIKALNTETNLEFTLDGPKGRILHMTFGNNILFAGAEDGVITAWRESSEAKSPFELVASLTGHTKSVVCLTVGRKMLYSGSMDQSIKVWDMDKLQCTMTLNEHNDVVTSLICWDEFLLSSSSDGTIKIWACMEKGTLTVGIVSLFGMPNAKGKPILFSSCKDNSVRMYELPSFSERGLLYAKKDIASFELGTDGLFFTGDETGLLSVWKWNELPKMTSD* 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g01899 406 ProSiteProfiles Trp-Asp (WD) repeats profile. 247 286 IPR001680 GO:0005515
Phac11g01899 406 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 247 279 - -
Phac11g01899 406 Gene3D - 215 404 IPR015943 GO:0005515
Phac11g01899 406 MobiDBLite consensus disorder prediction 47 67 - -
Phac11g01899 406 SMART c3hfinal6 11 36 IPR000571 GO:0046872
Phac11g01899 406 SMART c3hfinal6 85 111 IPR000571 GO:0046872
Phac11g01899 406 SUPERFAMILY WD40 repeat-like 115 359 IPR036322 GO:0005515
Phac11g01899 406 Pfam WD domain, G-beta repeat 242 277 IPR001680 GO:0005515
Phac11g01899 406 Pfam WD domain, G-beta repeat 118 155 IPR001680 GO:0005515
Phac11g01899 406 Pfam WD domain, G-beta repeat 282 316 IPR001680 GO:0005515
Phac11g01899 406 PANTHER - 43 402 IPR044715 -
Phac11g01899 406 Gene3D - 109 199 IPR015943 GO:0005515
Phac11g01899 406 ProSiteProfiles Zinc finger C3H1-type profile. 85 112 IPR000571 GO:0046872
Phac11g01899 406 SMART WD40_4 116 155 IPR001680 GO:0005515
Phac11g01899 406 SMART WD40_4 240 277 IPR001680 GO:0005515
Phac11g01899 406 SMART WD40_4 280 317 IPR001680 GO:0005515
Phac11g01899 406 SMART WD40_4 195 232 IPR001680 GO:0005515
Phac11g01899 406 SMART WD40_4 359 396 IPR001680 GO:0005515
Phac11g01899 406 ProSitePatterns Trp-Asp (WD) repeats signature. 264 278 IPR019775 -
Phac11g01899 406 PRINTS G protein beta WD-40 repeat signature 264 278 IPR020472 -
Phac11g01899 406 PRINTS G protein beta WD-40 repeat signature 304 318 IPR020472 -
Phac11g01899 406 PRINTS G protein beta WD-40 repeat signature 142 156 IPR020472 -
Phac11g01899 406 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 123 155 - -
Phac11g01899 406 MobiDBLite consensus disorder prediction 47 70 - -
Phac11g01899 406 Gene3D - 12 108 - -
Phac11g01899 406 ProSiteProfiles Trp-Asp (WD) repeats profile. 123 164 IPR001680 GO:0005515
Phac11g01899 406 ProSiteProfiles Trp-Asp (WD) repeats profile. 287 316 IPR001680 GO:0005515
Phac11g01899 406 ProSiteProfiles Zinc finger C3H1-type profile. 16 37 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g01899 Phac-Chr11 27114073 27116098 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac11g01899 89 286 Eukaryotic Initiation Factors Gene Family AT2G46290 24.324 7.83e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g01899 - - gmx:100787799 607.446