Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g01876 ATGACAGTCTTCTTAATTATATTTCTGTTCCAATACCTTCCCAAAATATATCATTCTGTTTGCCATCTGCGACGCACGCAAAACCTCTCTGGCTACATTTTTGGAACAGTTTGGTGGGGAATCGCCCTTAACATGATAGCTTATTTTGTTGCTTCCCATGCAGCAGGGGCATGTTGGTACTTGCTGGGGATTCAAAGGGCAGCAAAGTGTCTGAAAGTGCAGTGTGGAAAAACAAGTGGTTGTGGCATGAACATTCTGTCATGTCAAAGCCCTGTATATTATGGAAGCAATAAGAGTTTGTTGGTTAGGGATAGAGCAAGGTTGGCATGGGCAGAGAACAGGGAAGTGAGGCAAACATGCTTAAATGGCCCTGACAACTACAACTATGGAGCTTATAGATGGACCGTTCAGCTTGTCAAAAATAATAATCGTTTGGAAAAGATTCTTTTCCCTATCTTCTGGGGCCTAATGACTCTAAGCACTTTTGGAAACCTAGAGAGTACAACTGAATGGCTAGAAGTAGTTTTCAACATCATTGTGCTGACCAGTGGCCTTCTTCTTGTAACTATGTTGATCGGAAACATCAAGGTATTTTTGCATGCAACAACGTCAAAGAAGCAAGCAATGCAGTTGAAGATGAGGAACATTGAATGGTGGATGAGGAAACGAAGGTTGCCTCAAGGGTTTCGACAACGTGTGCGTAACTATGAGAGGCATCGTTGGGCTGCCATGAGAGGTGTTGATGAATGCGAGATGACCAGAAATCTTCCTGAAGGGTTAAGAAGAGACATCAAGTACCATCTTTGTCTAGACTTGGTTAGACAGGTGCCTCTGTTTCAACACATGGACGATCTGGTTCTAGAGAACATCTGTGACCGTGTGAAGTCCTTGATATTCACAAAGGGAGAAACAATAGCAAGAGAAGGAGACCCAGTTCAGAGAATGCTGTTTGTAGTAAGGGGTCACCTTCAAAGCAGCCAAGTTCTAAGGGATGGTGTAAAGAGTTGCTGCATGTTAGGGCCAGGAAACTTCAGTGGTGATGAGCTTCTTTCATGGTGTTTGAGGAGACCCTTCATAGAACGTCTTCCACCGTCTTCATCCACACTCATCACATTGGAAACGACAGAGGCTTTTGGCCTTGAAGCCGAGGATGTGAAGTACGTGACACAACATTTCAGGTACACATTTGTTAAGGAAAAGGTGAAGAGAAGTGCAAGGTATTACTCACCAGGGTGGAGAACTTGGGCTGCAGTGGCCATTCAATTGGCTTGGAGGAGGTACAAGCATAGGTTGACTTTGACCTCTCTGTCCTTTATAAGGCCTAGGAGACCCTTGTCAAGGTCCTCTTCCATGGGAGAAGATAGGCTTCGCCTCTACACTGCTTTGTTGACCTCACCAAAGCCTAATCAGGATGATTTTGACTTTTGA 1428 0.444 MTVFLIIFLFQYLPKIYHSVCHLRRTQNLSGYIFGTVWWGIALNMIAYFVASHAAGACWYLLGIQRAAKCLKVQCGKTSGCGMNILSCQSPVYYGSNKSLLVRDRARLAWAENREVRQTCLNGPDNYNYGAYRWTVQLVKNNNRLEKILFPIFWGLMTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRRLPQGFRQRVRNYERHRWAAMRGVDECEMTRNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGETIAREGDPVQRMLFVVRGHLQSSQVLRDGVKSCCMLGPGNFSGDELLSWCLRRPFIERLPPSSSTLITLETTEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRYKHRLTLTSLSFIRPRRPLSRSSSMGEDRLRLYTALLTSPKPNQDDFDF* 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g01876 475 Gene3D Jelly Rolls 276 394 IPR014710 -
Phac11g01876 475 SUPERFAMILY Voltage-gated potassium channels 5 199 - -
Phac11g01876 475 CDD CAP_ED 278 384 IPR000595 -
Phac11g01876 475 Pfam Cyclic nucleotide-binding domain 299 386 IPR000595 -
Phac11g01876 475 FunFam cyclic nucleotide-gated ion channel 4 276 394 - -
Phac11g01876 475 FunFam Cyclic nucleotide-gated ion channel 1 205 269 - -
Phac11g01876 475 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 2 440 - -
Phac11g01876 475 ProSiteProfiles cAMP/cGMP binding motif profile. 278 388 IPR000595 -
Phac11g01876 475 SUPERFAMILY cAMP-binding domain-like 204 392 IPR018490 -
Phac11g01876 475 Pfam Ion transport protein 24 196 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Phac11g01876 475 Gene3D Helix hairpin bin 203 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g01876 Phac-Chr11 25958117 25963896 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac11g01876 8 474 Ion Channels AT5G54250 85.867 0.0 846
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g01876 K05391 - gmx:100796761 918.302