Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g01874 ATGGCTACTACAATAACAGAGCAAGAGTCCTCATCACGTGCCTCGCACGTGCTCCACTACACCCCCACCCCCATCACCACCTCCGACGAGGAGGAGGAGGAGGAGGAGCATTTAGAAGGCAACGAGAACGAGCCCACCGGCGCAGGGTGGCGGTCAACGGCGGAGTGCGGCGGCGCGGGGCGGAGAACGTTGGGGAAGGTGTTGGACCCGAGGGCGAAGTGGGTCCAGGAATGGAACAGAGTGTTCCTGCTAGTGTGCGCCGCGGGGTTGTTCGTCGACCCTCTGTTCTTCTACGCGCTCTCCGTTAGCGACTCGTGCATGTGCGTGTTCGTTGACGGGTGGCTCGCCGTTACCGTGACGGTGCTGCGGTGCATGACGGACGCGCTGCACCTGTGGAACATGGTGCTCAGAATGAAGATGGCCAAACGCACGTTCGGGTTGGGAGCCGCTGCGGGACTCAGAGACACTCGGCCGCGCACTGTCGCGCTGGGGTATCTTAAGTCACGGACGGGATTCATTTTTGATTTGTTCGTGATTCTTCCTCTGCCACAGATCGTGCTTTGGGTGGCAATCCCGTCGTTGTTGGAGAAAGGTTCAGTGACGTTGGTGATGACAGTCTTCTTAATTATATTTCTGTTCCAATACCTTCCCAAAATATATCATTCTGTTTGCCATCTGCGACGCACGCAAAACCTCTCTGGCTACATTTTTGGAACAGTTTGGTGGGGAATCGCCCTTAACATGATAGCTTATTTTGTTGCTTCCCATGCAGCAGGGGCATGTTGGTACTTGCTGGGGATTCAAAGGGCAGCAAAGTGTCTGAAAGTGCAGTGTGGAAAAACAAGTGGTTGTGGCATGAACATTCTGTCATGTCAAAGCCCTGTATATTATGGAAGCAATAAGAGTTTGTTGGTTAGGGATAGAGCAAGGTTGGCATGGGCAGAGAACAGGGAAGTGAGGCAAACATGCTTAAATGGCCCTGACAACTACAACTATGGAGCTTATAGATGGACCGTTCAGCTTGTCAAAAATAATAATCGTTTGGAAAAGATTCTTTTCCCTATCTTCTGGGGCCTAATGACTCTAAGCACTTTTGGAAACCTAGAGAGTACAACTGAATGGCTAGAAGTAGTTTTCAACATCATTGTGCTGACCAGTGGCCTTCTTCTTGTAACTATGTTGATCGGAAACATCAAGGTATTTTTGCATGCAACAACGTCAAAGAAGCAAGCAATGCAGTTGAAGATGAGGAACATTGAATGGTGGATGAGGAAACGAAGGTTGCCTCAAGGGTTTCGACAACGTGTGCGTAACTATGAGAGGCATCGTTGGGCTGCCATGAGAGGTGTTGATGAATGCGAGATGACCAGAAATCTTCCTGAAGGGTTAAGAAGAGACATCAAGTACCATCTTTGTCTAGACTTGGTTAGACAGGTGCCTCTGTTTCAACACATGGACGATCTGGTTCTAGAGAACATCTGTGACCGTGTGAAGTCCTTGATATTCACAAAGGGAGAAACAATAGCAAGAGAAGGAGACCCAGTTCAGAGAATGCTGTTTGTAGTAAGGGGTCACCTTCAAAGCAGCCAAGTTCTAAGGGATGGTGTAAAGAGTTGCTGCATGTTAGGGCCAGGAAACTTCAGTGGTGATGAGCTTCTTTCATGGTGTTTGAGGAGACCCTTCATAGAACGTCTTCCACCGTCTTCATCCACACTCATCACATTGGAAACGACAGAGGCTTTTGGCCTTGAAGCCGAGGATGTGAAGTACGTGACACAACATTTCAGGTACACATTTGTTAAGGAAAAGGTGAAGAGAAGTGCAAGGTATTACTCACCAGGGTGGAGAACTTGGGCTGCAGTGGCCATTCAATTGGCTTGGAGGAGGTACAAGCATAGGTTGACTTTGACCTCTCTGTCCTTTATAAGGCCTAGGAGACCCTTGTCAAGGTCCTCTTCCATGGGAGAAGATAGGCTTCGCCTCTACACTGCTTTGTTGACCTCACCAAAGCCTAATCAGGATGATTTTGACTTTTGA 2037 0.4909 MATTITEQESSSRASHVLHYTPTPITTSDEEEEEEEHLEGNENEPTGAGWRSTAECGGAGRRTLGKVLDPRAKWVQEWNRVFLLVCAAGLFVDPLFFYALSVSDSCMCVFVDGWLAVTVTVLRCMTDALHLWNMVLRMKMAKRTFGLGAAAGLRDTRPRTVALGYLKSRTGFIFDLFVILPLPQIVLWVAIPSLLEKGSVTLVMTVFLIIFLFQYLPKIYHSVCHLRRTQNLSGYIFGTVWWGIALNMIAYFVASHAAGACWYLLGIQRAAKCLKVQCGKTSGCGMNILSCQSPVYYGSNKSLLVRDRARLAWAENREVRQTCLNGPDNYNYGAYRWTVQLVKNNNRLEKILFPIFWGLMTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNIEWWMRKRRLPQGFRQRVRNYERHRWAAMRGVDECEMTRNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGETIAREGDPVQRMLFVVRGHLQSSQVLRDGVKSCCMLGPGNFSGDELLSWCLRRPFIERLPPSSSTLITLETTEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWAAVAIQLAWRRYKHRLTLTSLSFIRPRRPLSRSSSMGEDRLRLYTALLTSPKPNQDDFDF* 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g01874 678 MobiDBLite consensus disorder prediction 1 52 - -
Phac11g01874 678 ProSiteProfiles cAMP/cGMP binding motif profile. 481 591 IPR000595 -
Phac11g01874 678 SUPERFAMILY cAMP-binding domain-like 407 595 IPR018490 -
Phac11g01874 678 Gene3D Jelly Rolls 479 597 IPR014710 -
Phac11g01874 678 FunFam Cyclic nucleotide-gated ion channel 1 408 472 - -
Phac11g01874 678 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 53 643 - -
Phac11g01874 678 Pfam Ion transport protein 78 398 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Phac11g01874 678 FunFam cyclic nucleotide-gated ion channel 4 479 597 - -
Phac11g01874 678 Pfam Cyclic nucleotide-binding domain 502 589 IPR000595 -
Phac11g01874 678 CDD CAP_ED 481 587 IPR000595 -
Phac11g01874 678 Gene3D Helix hairpin bin 406 472 - -
Phac11g01874 678 MobiDBLite consensus disorder prediction 1 25 - -
Phac11g01874 678 SUPERFAMILY Voltage-gated potassium channels 70 402 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g01874 Phac-Chr11 25954743 25963896 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac11g01874 64 677 Ion Channels AT5G54250 80.323 0.0 1016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g01874 K05391 - gmx:100796761 1221.84