Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g01860 ATGTCTTTTATTAAGGACTGGAGGGAGTTAGCAGTTCGTGATCTTTCCAACTTGGTAAAACCTGAGGACATTGTAACTTCAGAAAATTTAACTACCCTCCTTGCAATTGTTTCCAAGTATTCACAGAAGGATTGGCTTTCAAGCTACGAAACATTGACAGATTATTTGGCATGCGTTTTAGCTCCTTCTGTAAAATCTGAGAAGAAAGTACGCACTATCCTTGAAGATAGTGCAGAGATCTACAAGAAGGTGTGTGTTGCTGGGAATGATCCTGCACTTGCAGAGTCTCCAACTGAGGCCAAGTAG 306 0.4118 MSFIKDWRELAVRDLSNLVKPEDIVTSENLTTLLAIVSKYSQKDWLSSYETLTDYLACVLAPSVKSEKKVRTILEDSAEIYKKVCVAGNDPALAESPTEAK* 102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g01860 101 Gene3D - 4 89 - -
Phac11g01860 101 SUPERFAMILY Vacuolar ATP synthase subunit C 8 66 IPR036132 GO:0015078|GO:0033180|GO:1902600
Phac11g01860 101 Pfam V-ATPase subunit C 9 55 IPR004907 GO:0033180|GO:0046961|GO:1902600
Phac11g01860 101 PANTHER V-TYPE PROTON ATPASE SUBUNIT C 9 55 IPR004907 GO:0033180|GO:0046961|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g01860 Phac-Chr11 25208213 25209541 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac11g01860 10 56 Primary Pumps ATPases(2) AT1G12840 82.979 3.24e-20 81.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g01860 K02148 - gmx:100813963 91.2781