Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g01796 ATGTATAGAATTAAATTTCTCCATCCCCAGTATCAAGCACAGCCTACGCAAGAGATGAGAGGAAACTCCATCGACTTTCATCCTCCACTTACACTTCCAACAAATCCTTCAAGCACATTTCTCCATCTGCAGTATCAAGCACAACCTGCGCCAGAGATGAGAGGACATTCTGTCGACTTTCATCCTGCACTTACACTTCCAACAAATCCTTCAAGCACTTCTTCAGTGCGCGTGACAACTCCTCCACACTGGAGGAATCTTCCTCCTCAAGCCTTTCTTCAAGATGATGATGTTCCTTGGTTGGGTGACGATGATAGTGATATGGACTGGGACATTGATGACATGTCATATGAGGAGCTTCTTGAATTAGATGAACGAATTGGCAACATATGCACAGGTTTGTTGGATGAAATTATTGCAAGGCAAATGAAGACAAAAACTTATCTACTTCCTAATAACTCGGGAGAGGTAGCTGCTGAGGAACAAGAAAATGATCTTTGCATAATATGTCAGGATGAATATAAGAACAAGCAGGAAATCGGAATTCTTCAATGTGGACATGGATATCACACAAATTGTATAAGGACATGGTTACACGAGAAAAATGTTTGTCCCTTAAGCAAATCAGAAGCATTGACTCTTGGATAG 648 0.412 MYRIKFLHPQYQAQPTQEMRGNSIDFHPPLTLPTNPSSTFLHLQYQAQPAPEMRGHSVDFHPALTLPTNPSSTSSVRVTTPPHWRNLPPQAFLQDDDVPWLGDDDSDMDWDIDDMSYEELLELDERIGNICTGLLDEIIARQMKTKTYLLPNNSGEVAAEEQENDLCIICQDEYKNKQEIGILQCGHGYHTNCIRTWLHEKNVCPLSKSEALTLG* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g01796 215 MobiDBLite consensus disorder prediction 65 81 - -
Phac11g01796 215 SUPERFAMILY RING/U-box 160 206 - -
Phac11g01796 215 MobiDBLite consensus disorder prediction 65 89 - -
Phac11g01796 215 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 144 212 IPR013083 -
Phac11g01796 215 Pfam RING-H2 zinc finger domain 161 206 IPR024766 GO:0008270
Phac11g01796 215 ProSiteProfiles Zinc finger RING-type profile. 167 208 IPR001841 -
Phac11g01796 215 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 17 212 IPR045191 GO:0061630
Phac11g01796 215 CDD RING-H2_RNF24-like 165 211 - -
Phac11g01796 215 SMART ring_2 167 207 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g01796 Phac-Chr11 23950856 23951778 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac11g01796 103 212 C3H Transcription Factor Family AT2G15530 44.144 1.85e-26 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g01796 K19041 - pvu:PHAVU_011G149000g 358.992