Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g01795 ATGATAACTGCCATCGGACTCAGGGATATGGATGAAATGAGTGAAGGAAACATTTTTTGGCCTAATATGTGCAGAGTGGCAGTGAGAGAAAATATAGATTCTCATTACTTACTAGATGCTTATGACAATGGGATGGTGTATGGAAGGAGAGCATTCAATGGAGTTCAACATCAACCTATTCATACGGCTCCAACTCCTTCATTAGAGATTGCAACAAATGATCCCCAAAGCTATCATGATATAGCAAGAAGCAGAAACAGAAGCGACTACAGATTTCTCCATCCGCAGTATCAAGCACAGCCTACGCAAGAGATGAGAGGAAACTCCATCGACTTTCATCCTCCACTTACACTTCCAACAAATCCTTCAAGCACATTTCTCCATCTGCAGTATCAAGCACAACCTGCGCCAGAGATGAGAGGACATTCTGTCGACTTTCATCCTGCACTTACACTTCCAACAAATCCTTCAAGCACTTCTTTAGTGCGCGTGATAACTCCTCCACACTGGAGGAATCTTCCTCCTCAAGCCTTTCTTCAAGATGATGATGTTCCTTGGTTGGGTGACGATGATAGTGATATGGACTGGGACATTGATGACATGTCATATGAGGAGCTTCTTGAATTAGATGAACGAATTGGCAACATATGCACAGGTTTGTTGGATGAAATTATTGCAAGGCAAATGAAGACAAAAACTTATCTACTTCCTAATAACTCTGGAGAGGTAGCTGCTGAGGAACAAGAAAATGATCTTTGCATAATATGTCAGGATGAATATAAGAACAAGCAGGAAATCGGAATTCTTCAATGTGGACATGGATATCACGCAGATTGTATAAGGACATGGTTACACGAGAAAAATGTTTGTCCCTTATGCAAATCAGAAGCATTTACTCTTGGATAG 906 0.4106 MITAIGLRDMDEMSEGNIFWPNMCRVAVRENIDSHYLLDAYDNGMVYGRRAFNGVQHQPIHTAPTPSLEIATNDPQSYHDIARSRNRSDYRFLHPQYQAQPTQEMRGNSIDFHPPLTLPTNPSSTFLHLQYQAQPAPEMRGHSVDFHPALTLPTNPSSTSLVRVITPPHWRNLPPQAFLQDDDVPWLGDDDSDMDWDIDDMSYEELLELDERIGNICTGLLDEIIARQMKTKTYLLPNNSGEVAAEEQENDLCIICQDEYKNKQEIGILQCGHGYHADCIRTWLHEKNVCPLCKSEAFTLG* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g01795 301 CDD RING-H2_RNF24-like 251 297 - -
Phac11g01795 301 ProSiteProfiles Zinc finger RING-type profile. 253 294 IPR001841 -
Phac11g01795 301 SUPERFAMILY RING/U-box 246 298 - -
Phac11g01795 301 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 230 298 IPR013083 -
Phac11g01795 301 Pfam Ring finger domain 252 294 IPR001841 -
Phac11g01795 301 SMART ring_2 253 293 IPR001841 -
Phac11g01795 301 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 73 298 IPR045191 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g01795 Phac-Chr11 23945576 23947086 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac11g01795 189 298 C3H Transcription Factor Family AT2G15530 45.045 1.59e-27 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g01795 K19041 - pvu:PHAVU_011G149000g 498.049