Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g01729 ATGATGGCAGCACTTACAATCACCATGAATCCAATGAAGTGCCTGTGTTTTACAGATCTAACTCTACTCATGCCACCTTTTCCAGCAGCAGCAGCTGCACCTAGAAGACAACAAATTCATATTCACAATGAGGATATGGGAAGGCTCAGAGATATTTTCCTTCAGCAACCTTCAAGATATACATTCCAATCAAGAACACAAGTTCCCCCAGTAGTAGAAATTTCCAAATCAACAGCTTTGAGCAAGCTTAAGAAAGTAGTGTATGACCATCACCCTCCCCTAAAGAGGTATGCTAGGAACCTGAGTTTATATTACAGAAAAAATGCTGAAGAAAAACCTTTGGAAGAGAAGGAGAAGGAAAAAGATGAAGATGGTAAGAGGTGTGCCATTTGCTTGGAAGATTTTAAGACTGGTGAAGAGGTGATGCTCACTCCATGCAACCACATGTTTCATGAGGATTGCATAGTGCCATGGCTAACAACTAAGGGTCAGTGCCCAGTTTGTAGGTTTGTGATTTGTGAGATGGGATGTGGGAACCCTTCATCCTTCAACAACAATGACTTGGCCTCTTTGGAATCTAACAACCTCTTTAATGGAGAGCTTTTTTCAGTTTTGAGGGCCATGGAAGAAGCTTTTCAATTGGGCAGTAGGACTTAA 657 0.4155 MMAALTITMNPMKCLCFTDLTLLMPPFPAAAAAPRRQQIHIHNEDMGRLRDIFLQQPSRYTFQSRTQVPPVVEISKSTALSKLKKVVYDHHPPLKRYARNLSLYYRKNAEEKPLEEKEKEKDEDGKRCAICLEDFKTGEEVMLTPCNHMFHEDCIVPWLTTKGQCPVCRFVICEMGCGNPSSFNNNDLASLESNNLFNGELFSVLRAMEEAFQLGSRT* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g01729 218 PANTHER SI:CH211-59O9.10 120 174 - -
Phac11g01729 218 FunFam RING/U-box superfamily protein 112 186 - -
Phac11g01729 218 SUPERFAMILY RING/U-box 110 175 - -
Phac11g01729 218 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 78 173 IPR013083 -
Phac11g01729 218 ProSiteProfiles Zinc finger RING-type profile. 128 169 IPR001841 -
Phac11g01729 218 Pfam Ring finger domain 127 169 IPR001841 -
Phac11g01729 218 SMART ring_2 128 168 IPR001841 -
Phac11g01729 218 SMART ringv_2 127 169 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g01729 Phac-Chr11 22241170 22244023 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac11g01729 23 216 C3H Transcription Factor Family AT3G58720 42.000 5.99e-38 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g01729 - - pvu:PHAVU_011G126500g 369.007