Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g01704 ATGAGCACCATTTGTTCAGAACACAAGTTCCAACTTCAACCCTCTCACCAACTTCTCTCCCTCAAGAAATCCCTAAGGGAAATTGACATCCCGCCAAGGAAGCTCCTCATGCGCCGCGCCGCCGCCGACATGTTTTCCGACGACACCCTCCTCCACAAATACCTCCCCAACACCAAATCCATGGACTCCGACGACTCTGATGATGTCGGAGACCCTTATGCCTCCGACGAATTCCGCATGTTCGAGTTCAAGGTTCGTCGGTGCACTCGCAGCCGGAGCCATGACTGGACAGACTGTCCTTTTGCACACCCCGGCGAGAAGGCTCGCCGCCGTGACCCTCGTCGGTTTCATTACTCTGGGACGGTGTGTCCAGAGTATCGGCGCGGGCAGTGTAGCAGCGGCGATGCATGTGAGTTCTCTCATGGGGTGTTTGAGTGCTGGTTGCACCCTTCTAGGTATAGAACTGAGGCTTGCAAGGATGGGAAGAATTGCAAGCGAAAAGTTTGCTTTTTCGCTCACACCCCTCGCCAACTCAGGGTTTTGCCTCCCCAAGACAGTATCAAGAAGAAAAAGTGCACCAATATGAGTCCTCATAATCATAATAATAATAATAATAGTAACCATTGCTGTTTGTTTTGTCATTGCTCATCTACTTGTTCACCAACTTCTACCCTGTTTGGCATGTCTCATTTTTCTCCTCCTTTATCACCTTCTTCCTCTTCCTCTTCCCCTTCTAGGTTTGAGCCTAGCCACCGTCATGGTGTTGTGAGCTACAAGGATGTGTTCTCCGAGCTTATGTGCTCCATGGAGGGTTTGAATTTTGGCGAGGCTTCATATGTGTCTGCTTCTAAGCCTCACAGTCTGTCTTGGCTTGATGTCTCTGAGGATAATAAACAGTTCAATATTCATTCACCAACCATAGCTACATGTGGAAGCTTTTCCAATAATGAGAATAGAAGATTTTTGAGGGAAGAAAGTAGAAGCTTTTCCATTAATGGGAATGGAAGGTTTTCGAGGGAAGAAAGTGGGGTTGTTGATGATGTCATTGCTCCAGATCTGGCGTGGGTTAATGACTTGCTGATGTAG 1086 0.4816 MSTICSEHKFQLQPSHQLLSLKKSLREIDIPPRKLLMRRAAADMFSDDTLLHKYLPNTKSMDSDDSDDVGDPYASDEFRMFEFKVRRCTRSRSHDWTDCPFAHPGEKARRRDPRRFHYSGTVCPEYRRGQCSSGDACEFSHGVFECWLHPSRYRTEACKDGKNCKRKVCFFAHTPRQLRVLPPQDSIKKKKCTNMSPHNHNNNNNSNHCCLFCHCSSTCSPTSTLFGMSHFSPPLSPSSSSSSPSRFEPSHRHGVVSYKDVFSELMCSMEGLNFGEASYVSASKPHSLSWLDVSEDNKQFNIHSPTIATCGSFSNNENRRFLREESRSFSINGNGRFSREESGVVDDVIAPDLAWVNDLLM* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g01704 361 FunFam Zinc finger CCCH domain-containing protein 66 75 143 - -
Phac11g01704 361 ProSiteProfiles Zinc finger C3H1-type profile. 118 144 IPR000571 GO:0046872
Phac11g01704 361 SMART c3hfinal6 117 143 IPR000571 GO:0046872
Phac11g01704 361 SMART c3hfinal6 152 175 IPR000571 GO:0046872
Phac11g01704 361 PANTHER UNKEMPT FAMILY MEMBER 44 360 IPR045234 -
Phac11g01704 361 Gene3D - 118 181 - -
Phac11g01704 361 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 122 142 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g01704 Phac-Chr11 21878285 21880054 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac11g01704 73 244 C2H2 Transcription Factor Family AT5G12850 48.256 8.93e-53 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Phac11g01704 zf-CCCH 9.6e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g01704 K23047 - gmx:100820375 507.294