Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g01688 ATGGCCTTAGATAACTTGGAGGAGACTGTGCCCCAAAACGAAAAGTGGAAATCTTCCAATGAAGTCATTGCAGATTCTGATATAAACGCCTCTAGTGGCTTTGACTGCAACATCTGCCTTGAGTGTGTGCAAGATCCAGTGGTCACACTTTGTGGTCATCTTTATTGCTGGCCCTGCATATACAAATGGCTTCATTATTTTCAACGTACCTCTATAGACAGTGAAGAGCAACAGAATCCACAATGTCCAGTATGCAAAGCAGAAGTTTCTCAATCCTCCCTTGTTCCATTATATGGTCGTGGCCTAACAACGAGACCTTCTAAGGGGAAGGCACATCAAGTTGGGACTGTCATACCACAGAGACCTTATGGTCCGAGATCATTGAATACTAGCAGTGTTTCCCAACCTATTTCTCAAAGTTATCATCATCCCTATAGTAATCCTTATTATACTCAGCAATTCAACTCAGTTCCAAGCGGTTATGCCTCACCAATGCTTAGAACAAGTGGTTCACTAGACAACTCATTTGGAATCTTTGGGGAAATGATATATGCAAGGGTGTTTGGTAACCAGGTGACAAACATGCATCCATATGCTAATTCGTACAATCTTTCAGGGATCAGTAACCCAAGGATGAGAAGACATTTAATGCACGTTGATAAATCACTCAGCAGAATAAGTTGTTTCCTCCTATGCTGCCTAGTTTTGTGTCTCCTCTTATTCTGA 726 0.4174 MALDNLEETVPQNEKWKSSNEVIADSDINASSGFDCNICLECVQDPVVTLCGHLYCWPCIYKWLHYFQRTSIDSEEQQNPQCPVCKAEVSQSSLVPLYGRGLTTRPSKGKAHQVGTVIPQRPYGPRSLNTSSVSQPISQSYHHPYSNPYYTQQFNSVPSGYASPMLRTSGSLDNSFGIFGEMIYARVFGNQVTNMHPYANSYNLSGISNPRMRRHLMHVDKSLSRISCFLLCCLVLCLLLF* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g01688 241 ProSitePatterns Zinc finger RING-type signature. 51 60 IPR017907 -
Phac11g01688 241 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 10 238 IPR045103 GO:0005783|GO:0006511|GO:0061630
Phac11g01688 241 SMART ring_2 36 85 IPR001841 -
Phac11g01688 241 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 114 IPR013083 -
Phac11g01688 241 CDD RING-HC_AtRMA-like 34 87 - -
Phac11g01688 241 Pfam RING-type zinc-finger 36 83 IPR027370 -
Phac11g01688 241 SUPERFAMILY RING/U-box 23 92 - -
Phac11g01688 241 ProSiteProfiles Zinc finger RING-type profile. 36 86 IPR001841 -
Phac11g01688 241 MobiDBLite consensus disorder prediction 103 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g01688 Phac-Chr11 17161686 17165198 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac11g01688 21 241 C3H Transcription Factor Family AT4G28270 38.428 3.41e-47 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g01688 K10666 - gmx:100786373 390.193