Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g01549 ATGGTTGAGCGAAAGCAGTTCAAGACCAAGTTATGTGTTCTGTATCAGAGAGGTCGCTGTAATCGCCATAATTGCTCCTTCGCACATGGGAATTCCGAGCTTCGACGTTTCCCTGCCTCGTTTAGTGGGAGGAGAGACTATTTAGGTAATGACTTGAGGGATAAACTTGACAGAAGGAATTTATCTCCTCGAAGGTACTCACCAGCTCAAGATGCAAGAGGCCGACAGAGCATCCGTGAATACAGTCCTCCAAGGTCTTTGGAGAATAAAAGAAGACATAGGAGAAAACAGGGTATTACTGGTCAAAGTGATACTTCTGGAAATTTGAAAGCCTCAGATAGAGTTCAAGATCAAGTAAAAGAAAGAAAAATGCTTTCCTCTGGTTCTAGGAATACTCTTGAGGAGCAGCTGAAGAAAGTAGATTCAGGTATCAGTGTTCTACAAAACCGAAAATTTCAGCTAGAGGTCTACCTTGATGAGAGTATTCAAGAAGTAGATAGCCTTAAGTCTAGAATTCAGGAGCTTGAAACTCAATTATGCAAAGAGGATGAGGAGTGCAAAAGAATTACTTCAAGAATAAGGAAATTTGTTAGAGTCCACAATCATACGTCCCAGTTACAAGATGAACTGAAGAGATCTCAAGTCCGACTTCAACGGTTCGGAGATCAGCTAGTCTCAGAAATTTCTAAAATTGGTGGCAATGAGGATTTAAGCATTGATATTGTCAGTAATGGTGAAAATACTGGTCTTCTTCCAATTGTCAAGCATAATGTGGAGCATAATGATGCATCATCCCACAGAAAAAGGCTACATATTGAACGAGATGCTTTGGAAGATTTAAAACAAGATAGATCAAAAGATGGCCATTTGGTTGAGACAGGTAGAACTAAGAAGCGATCTCGGTGGAATATATCAGATCAATTGAATGACGAGTCCCTTGGGGGCCCAGACAATGCAACTGAAGTTATTAGAGTTCTAGATCCTGAAGGCAGGCACAAGAGAGGATTGAAGCAACCTAGGATTGAAGTGCCATCAACTAGCATGGCGGCTCATGTGGCTGATGAGGACGTTGATATTGAACTTTACAACGGAACTGACGTCAATGAAACTGCAAATACAGAAAACGAGAATGGTGTGCCATATAAGGTGAAGGTTGCACCACTTATGCTTCCCCCAGCTTTGATACCTCGCAGCAATTATTCGAAGTACGAGGGTAACGACGAGAATGTTGATGTGGATGGCTGA 1245 0.4177 MVERKQFKTKLCVLYQRGRCNRHNCSFAHGNSELRRFPASFSGRRDYLGNDLRDKLDRRNLSPRRYSPAQDARGRQSIREYSPPRSLENKRRHRRKQGITGQSDTSGNLKASDRVQDQVKERKMLSSGSRNTLEEQLKKVDSGISVLQNRKFQLEVYLDESIQEVDSLKSRIQELETQLCKEDEECKRITSRIRKFVRVHNHTSQLQDELKRSQVRLQRFGDQLVSEISKIGGNEDLSIDIVSNGENTGLLPIVKHNVEHNDASSHRKRLHIERDALEDLKQDRSKDGHLVETGRTKKRSRWNISDQLNDESLGGPDNATEVIRVLDPEGRHKRGLKQPRIEVPSTSMAAHVADEDVDIELYNGTDVNETANTENENGVPYKVKVAPLMLPPALIPRSNYSKYEGNDENVDVDG* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g01549 414 MobiDBLite consensus disorder prediction 114 128 - -
Phac11g01549 414 Coils Coil 158 178 - -
Phac11g01549 414 ProSiteProfiles Zinc finger C3H1-type profile. 6 32 IPR000571 GO:0046872
Phac11g01549 414 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 40 1 413 IPR045868 GO:0046872
Phac11g01549 414 SUPERFAMILY CCCH zinc finger 4 36 IPR036855 GO:0046872
Phac11g01549 414 Gene3D - 1 36 - -
Phac11g01549 414 Coils Coil 130 150 - -
Phac11g01549 414 MobiDBLite consensus disorder prediction 54 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g01549 Phac-Chr11 13660725 13674525 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Phac11g01549 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g01549 - - gmx:100811131 698.353