Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g01524 ATGGTTATGGGGAAAACACTGTTCCTCTTGGTTTTGTGCTTGTGGATTCCCTTGGAAGTGATGGGGAGGAAAGAACCTTCCTCACCTACCAGTGTGAATTCCATTGTTTCTTCAAGGCCGAAGGTTGTGAAATTTGGAGCCCTCTTCCCTGTGGATTCTGTCATTGGAAGATCTGCTTTACCTGCAATTTTGGCTGCTGTTAAAGATGTTAATTCTAGCACGAGCATTCTCCCTGGCATTGACCTGCAAGTTATTTTGCACAGTACAAATTGCAGTGCGTTTCTTGGAACAATGGAAGCTCTGCAGTTGATGGAGAATGATGTGGTTGCTGTTGTTGGTCCACTATCATCTGGAATAGCTCATATAATCTCTCATGTTGTTAATGAACTCCATGTACCTCTTCTGTCGTTTGGGGCAACTGACCCCACTCTATCTTCTCTACAATACCCATATTTTATCCGCACTACTCAGAACGATTATTTTCAGATGTATGCAGTTTCAGCCTTTATAAATTATCACAGATGGAGGGAGGTAATTGCCATCTATGTAGATGATGACAATGGAAGGAATGGGATTTCTGTATTGGGTGATGCACTGTCAAAGAAACGTGCCAAGATCTCTTACAAGGCTGCTTTTTCTCCTGGGGCCTCAGAAAGTGATATCAGTGACTTGTTAAATGAAGTGAACATGATGGAATCCCGAGTCTATGTTCTGCATGTGAATCCTGATACTGGTTTAGCAATCTTCTCTATTGCCAAGAAGCTCAGAATGATGGGCAGTGGCTATGTTTGGATTTCAACAGATTGGCTTCCTTCAGTGCTGGATTCCTTAGAGTCACCTGATCCTGGCACAATGGATCTCTTACAAGGGATCGTGGCTTTTCGTCATCACATTCCTGATACTGATCTCAAGAAGAATCTTCTCTCCAGGTTGAAAAGCCAAAGAGTCAAAGAGACTGTAAGCTTCAATTCTTATGCTTTTTATGCTTATGATTCTGTTTGGTTAGCAGCTCGTGCTCTTGATGCTTATCTCAACGAAGGTGGAAATATATCTTTTTCTAATGACCCTAAGTTGCAAGACACAAATGGAAGCATGTTGCATTTAGCGTCACTTCGTACCTTTGATGGTGGTCCACAGTTTCTCCAGACAGTTTTGGGAATGAACTTCACTGGTGTGAGTGGTCAAATTGAGTTTGACATGGACAAGAATTTACTTCATCCAGCATATGAAATTCTCAATATTGGTGGTAGTGGATTCCGTAGAATTGGTTATTGGTCTAATCATTCTGGTTTATCAGTTATAGCTCCTGAAACTTTATATCTGAAAAAGCCGTCAAACACATCTTTGCTGAGAAATCAGCAACTGCATAGTGTGATATGGCCTGGAGAGGTTACAGCTACACCAAGGGGGTGGGTATTTCCCAACAATGGACAGCCACTTAGGATAGCAGTTCCTAACCGAGTCAGCTACAAGGACTTTGTTTCTAAGGACAAGAACCCACCAGGGGTACAAGGCTATTGCATTGACGTCTTTGAAGCAGCCATAAAATTGTTGCCTTACCCTGTCCCACGAAAATACATGTTATTTGGAAATGGTAAAAGGAATCCTAGCTACAACGACCTTGTGGAACAAGTTGCACAAAATAACTTTGATGCAGTTGTTGGAGATGTTACAATTGTCACAAATAGGACAAGGATTCTGGATTTTACTCAACCTTTCTTGCCATCAGGGCTTGTTGTTGTTGTTCCTTTTGAGGAGCAGAAGTCAAGCCCTTTGTCTTTCCTTGAGCCATTCACTACTGAAATGTGGTGTGTCACTGGTGTTTTTTTTCTTTTTGTTGGAAGTGTTGTATGGATTCTTGAGCACCGGCTCAATCCTGACTTCCGGGGTTCACCGAGGAAACAACTTATAACAGTGTTTTGGTTTAGTTTCTCAACAATGTTTTTCTCTCACAGGGAGAACACTGTGAGTGGACTTGGACGATTGGTGCTAATCATATGGCTCTTTGTGGTGTTGATCATAAATTCAAGCTACACTGCTAGCTTGACCTCTATCCTCACTGTGCAGCAACTGTCATCTCAAATTGAAGGAATTGACAGCTTGATCTCAAGTACTGAACCGATTGGAATTCAAGATGGTTCATTTGCACGGAAGTATCTTGTAGATGACCTCCATATAGCTGAATCTAGAATAGTTACGTTGAAAAACATGGAGGATTATATTGATGCCCTTCAGCGAGGCCCTAAAGCTGGAGGGGTTGTGGCAGTTGTTGATGAGCTTCCTTACATTGAGGTCTTGATGTCCAGCAGTCACTGTAAGTTCAGAATTGTTGGCCAGGAGTTCACTAAAAGTGGCTGGGGATTTGCATTCCAGAGGGACTCTCCCCTTGCTGTTGACTTGTCAACAGCCATTCTTCAACTTTCTGAGAGTGGTGACCTGCAAAGGATTCATGACAAATGGCTTAATATAAAGGAGTGTACAACCGTTGAAGTTGATTCAAACAAACTAGCTCTGACAAGCTTCTGGGGCCTCTTTCTTATATGTGGCATTGCATTTTTCATTGCCCTGATTATTTTCTTTGCTAGAATCTTCTGTCAATATAACAAATTTATCCCAGAGTCTGAAAAAACTGATGAGGAAATTCAACCAGTCAGGAGGTCAAGACGTCCAAGCAGAACTCCTAGCCTGAAGAAGTTGATGGTATTTGTAGATAAAAGGGAAGCAGAAGTCAAAGAGATACTTAGGGAAAACAAAAAAAGGAGACACAGCCAAAGCTTGGATGACCATTCTGTTCCATCAGCCATCTAG 2808 0.4195 MVMGKTLFLLVLCLWIPLEVMGRKEPSSPTSVNSIVSSRPKVVKFGALFPVDSVIGRSALPAILAAVKDVNSSTSILPGIDLQVILHSTNCSAFLGTMEALQLMENDVVAVVGPLSSGIAHIISHVVNELHVPLLSFGATDPTLSSLQYPYFIRTTQNDYFQMYAVSAFINYHRWREVIAIYVDDDNGRNGISVLGDALSKKRAKISYKAAFSPGASESDISDLLNEVNMMESRVYVLHVNPDTGLAIFSIAKKLRMMGSGYVWISTDWLPSVLDSLESPDPGTMDLLQGIVAFRHHIPDTDLKKNLLSRLKSQRVKETVSFNSYAFYAYDSVWLAARALDAYLNEGGNISFSNDPKLQDTNGSMLHLASLRTFDGGPQFLQTVLGMNFTGVSGQIEFDMDKNLLHPAYEILNIGGSGFRRIGYWSNHSGLSVIAPETLYLKKPSNTSLLRNQQLHSVIWPGEVTATPRGWVFPNNGQPLRIAVPNRVSYKDFVSKDKNPPGVQGYCIDVFEAAIKLLPYPVPRKYMLFGNGKRNPSYNDLVEQVAQNNFDAVVGDVTIVTNRTRILDFTQPFLPSGLVVVVPFEEQKSSPLSFLEPFTTEMWCVTGVFFLFVGSVVWILEHRLNPDFRGSPRKQLITVFWFSFSTMFFSHRENTVSGLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLSSQIEGIDSLISSTEPIGIQDGSFARKYLVDDLHIAESRIVTLKNMEDYIDALQRGPKAGGVVAVVDELPYIEVLMSSSHCKFRIVGQEFTKSGWGFAFQRDSPLAVDLSTAILQLSESGDLQRIHDKWLNIKECTTVEVDSNKLALTSFWGLFLICGIAFFIALIIFFARIFCQYNKFIPESEKTDEEIQPVRRSRRPSRTPSLKKLMVFVDKREAEVKEILRENKKRRHSQSLDDHSVPSAI* 936
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g01524 935 MobiDBLite consensus disorder prediction 914 935 - -
Phac11g01524 935 FunFam Glutamate receptor 591 721 - -
Phac11g01524 935 Gene3D - 591 711 - -
Phac11g01524 935 Gene3D - 158 431 - -
Phac11g01524 935 FunFam Glutamate receptor 158 325 - -
Phac11g01524 935 FunFam Glutamate receptor 717 825 - -
Phac11g01524 935 PIRSF IGluLR_plant 1 934 IPR017103 -
Phac11g01524 935 FunFam Glutamate receptor 475 591 - -
Phac11g01524 935 SUPERFAMILY Periplasmic binding protein-like I 38 472 IPR028082 -
Phac11g01524 935 Pfam Receptor family ligand binding region 60 415 IPR001828 -
Phac11g01524 935 Pfam Ligand-gated ion channel 823 851 IPR001320 GO:0015276|GO:0016020
Phac11g01524 935 Gene3D - 713 825 - -
Phac11g01524 935 Gene3D - 474 590 - -
Phac11g01524 935 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 44 887 IPR015683 -
Phac11g01524 935 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 56 72 - -
Phac11g01524 935 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 247 270 - -
Phac11g01524 935 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 116 144 - -
Phac11g01524 935 SUPERFAMILY Periplasmic binding protein-like II 456 821 - -
Phac11g01524 935 Pfam Bacterial extracellular solute-binding proteins, family 3 490 822 IPR001638 -
Phac11g01524 935 CDD GluR_Plant 478 821 - -
Phac11g01524 935 SMART GluR_14 481 823 IPR001320 GO:0015276|GO:0016020
Phac11g01524 935 CDD PBP1_GABAb_receptor_plant 44 433 IPR044440 -
Phac11g01524 935 Gene3D - 62 406 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g01524 Phac-Chr11 13080663 13086466 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac11g01524 39 788 Ion Channels AT1G05200 68.400 0.0 1097
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g01524 K05387 - gmx:100802782 1604.73