Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g01523 ATGGTTATGGGGAAAACACTGTTCCTCTTGGTTTTGTGCTTGTGGATTCCCTTGGAAGTGATGGGGAGGAAAGAACCTTCCTCACCTACCAGTGTGAATTCCATTGTTTCTTCAAGGCCGAAGGTTGTGAAATTTGGAGCCCTCTTCCCTGTGGATTCTGTCATTGGAAGATCTGCTTTACCTGCAATTTTGGCTGCTGTTAAAGATGTTAATTCTAGCACGAGCATTCTCCCTGGCATTGACCTGCAAGTTATTTTGCACAGTACAAATTGCAGTGCGTTTCTTGGAACAATGGAAGCTCTGCAGTTGATGGAGAATGATGTGGTTGCTGTTGTTGGTCCACTATCATCTGGAATAGCTCATATAATCTCTCATGTTGTTAATGAACTCCATGTACCTCTTCTGTCGTTTGGGGCAACTGACCCCACTCTATCTTCTCTACAATACCCATATTTTATCCGCACTACTCAGAACGATTATTTTCAGATGTATGCAGTTTCAGCCTTTATAAATTATCACAGATGGAGGGAGGTAATTGCCATCTATGTAGATGATGACAATGGAAGGAATGGGATTTCTGTATTGGGTGATGCACTGTCAAAGAAACGTGCCAAGATCTCTTACAAGGCTGCTTTTTCTCCTGGGGCCTCAGAAAGTGATATCAGTGACTTGTTAAATGAAGTGAACATGATGGAATCCCGAGTCTATGTTCTGCATGTGAATCCTGATACTGGTTTAGCAATCTTCTCTATTGCCAAGAAGCTCAGAATGATGGGCAGTGGCTATGTTTGGATTTCAACAGATTGGCTTCCTTCAGTGCTGGATTCCTTAGAGTCACCTGATCCTGGCACAATGGATCTCTTACAAGGGATCGTGGCTTTTCGTCATCACATTCCTGATACTGATCTCAAGAAGAATCTTCTCTCCAGGTTGAAAAGCCAAAGAGTCAAAGAGACTGTAAGCTTCAATTCTTATGCTTTTTATGCTTATGATTCTGTTTGGTTAGCAGCTCGTGCTCTTGATGCTTATCTCAACGAAGGTGGAAATATATCTTTTTCTAATGACCCTAAGTTGCAAGACACAAATGGAAGCATGTTGCATTTAGCGTCACTTCGTACCTTTGATGGTGGTCCACAGTTTCTCCAGACAGTTTTGGGAATGAACTTCACTGGTGTGAGTGGTCAAATTGAGTTTGACATGGACAAGAATTTACTTCATCCAGCATATGAAATTCTCAATATTGGTGGTAGTGGATTCCGTAGAATTGGTTATTGGTCTAATCATTCTGGTTTATCAGTTATAGCTCCTGAAACTTTATATCTGAAAAAGCCGTCAAACACATCTTTGCTGAGAAATCAGCAACTGCATAGTGTGATATGGCCTGGAGAGGTTACAGCTACACCAAGGGGGTGGGTATTTCCCAACAATGGACAGCCACTTAGGATAGCAGTTCCTAACCGAGTCAGCTACAAGGACTTTGTTTCTAAGGACAAGAACCCACCAGGGGTACAAGGCTATTGCATTGACGTCTTTGAAGCAGCCATAAAATTGTTGCCTTACCCTGTCCCACGAAAATACATGTTATTTGGAAATGGTAAAAGGAATCCTAGCTACAACGACCTTGTGGAACAAGTTGCACAAAATAACTTTGATGCAGTTGTTGGAGATGTTACAATTGTCACAAATAGGACAAGGATTCTGGATTTTACTCAACCTTTCTTGCCATCAGGGCTTGTTGTTGTTGTTCCTTTTGAGGAGCAGAAGTCAAGCCCTTTGTCTTTCCTTGAGCCATTCACTACTGAAATGTGGTGTGTCACTGGTGTTTTTTTTCTTTTTGTTGGAAGTGTTGTATGGATTCTTGAGCACCGGCTCAATCCTGACTTCCGGGGTTCACCGAGGAAACAACTTATAACAGTGTTTTGGTTTAGTTTCTCAACAATGTTTTTCTCTCACAGGGAGAACACTGTGAGTGGACTTGGACGATTGGTGCTAATCATATGGCTCTTTGTGGTGTTGATCATAAATTCAAGCTACACTGCTAGCTTGACCTCTATCCTCACTGTGCAGCAACTGTCATCTCAAATTGAAGGAATTGACAGCTTGATCTCAAGTACTGAACCGATTGGAATTCAAGATGGTTCATTTGCACGGAAGTATCTTGTAGATGACCTCCATATAGCTGAATCTAGAATAGTTACGTTGAAAAACATGGAGGATTATATTGATGCCCTTCAGCGAGGCCCTAAAGCTGGAGGGGTTGTGGCAGTTGTTGATGAGCTTCCTTACATTGAGGTCTTGATGTCCAGCAGTCACTGTAAGTTCAGAATTGTTGGCCAGGAGTTCACTAAAAGTGGCTGGGGATTTGTGAGTATCTCTATTTGCATGTCTGTTGTTAAGGGTTCCATATGTTCATATCTGCTGTACATTATTTTTGTTTGGATTGATGACTAA 2451 0.4182 MVMGKTLFLLVLCLWIPLEVMGRKEPSSPTSVNSIVSSRPKVVKFGALFPVDSVIGRSALPAILAAVKDVNSSTSILPGIDLQVILHSTNCSAFLGTMEALQLMENDVVAVVGPLSSGIAHIISHVVNELHVPLLSFGATDPTLSSLQYPYFIRTTQNDYFQMYAVSAFINYHRWREVIAIYVDDDNGRNGISVLGDALSKKRAKISYKAAFSPGASESDISDLLNEVNMMESRVYVLHVNPDTGLAIFSIAKKLRMMGSGYVWISTDWLPSVLDSLESPDPGTMDLLQGIVAFRHHIPDTDLKKNLLSRLKSQRVKETVSFNSYAFYAYDSVWLAARALDAYLNEGGNISFSNDPKLQDTNGSMLHLASLRTFDGGPQFLQTVLGMNFTGVSGQIEFDMDKNLLHPAYEILNIGGSGFRRIGYWSNHSGLSVIAPETLYLKKPSNTSLLRNQQLHSVIWPGEVTATPRGWVFPNNGQPLRIAVPNRVSYKDFVSKDKNPPGVQGYCIDVFEAAIKLLPYPVPRKYMLFGNGKRNPSYNDLVEQVAQNNFDAVVGDVTIVTNRTRILDFTQPFLPSGLVVVVPFEEQKSSPLSFLEPFTTEMWCVTGVFFLFVGSVVWILEHRLNPDFRGSPRKQLITVFWFSFSTMFFSHRENTVSGLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLSSQIEGIDSLISSTEPIGIQDGSFARKYLVDDLHIAESRIVTLKNMEDYIDALQRGPKAGGVVAVVDELPYIEVLMSSSHCKFRIVGQEFTKSGWGFVSISICMSVVKGSICSYLLYIIFVWIDD* 817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g01523 816 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 56 72 - -
Phac11g01523 816 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 116 144 - -
Phac11g01523 816 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 247 270 - -
Phac11g01523 816 FunFam Glutamate receptor 750 786 - -
Phac11g01523 816 FunFam Glutamate receptor 158 325 - -
Phac11g01523 816 Gene3D - 62 406 - -
Phac11g01523 816 Gene3D - 591 711 - -
Phac11g01523 816 Pfam Receptor family ligand binding region 60 415 IPR001828 -
Phac11g01523 816 Gene3D - 158 431 - -
Phac11g01523 816 Gene3D - 474 590 - -
Phac11g01523 816 FunFam Glutamate receptor 475 591 - -
Phac11g01523 816 Pfam Ligand-gated ion channel 600 705 IPR001320 GO:0015276|GO:0016020
Phac11g01523 816 FunFam Glutamate receptor 591 721 - -
Phac11g01523 816 SUPERFAMILY Periplasmic binding protein-like II 456 789 - -
Phac11g01523 816 CDD PBP1_GABAb_receptor_plant 44 433 IPR044440 -
Phac11g01523 816 Pfam Bacterial extracellular solute-binding proteins, family 3 490 781 IPR001638 -
Phac11g01523 816 PIRSF IGluLR_plant 1 790 IPR017103 -
Phac11g01523 816 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 44 789 IPR015683 -
Phac11g01523 816 SMART GluR_14 481 816 IPR001320 GO:0015276|GO:0016020
Phac11g01523 816 SUPERFAMILY Periplasmic binding protein-like I 38 472 IPR028082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g01523 Phac-Chr11 13080330 13086466 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac11g01523 39 789 Ion Channels AT1G05200 68.442 0.0 1097
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g01523 K05387 - gmx:100802782 1399.8