Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phac11g01457 ATGAGTGATATAAGGAAGTGGTTCATGAAATCACATGACAAGGGAAACAATGCCGCTCCCTCCAAGCCTTCCAATCAACCCAAGCCTTCTTCGGATAAACCCCAGTCCGAGAAGAATGTGGCTGGAGGTCAAGAAAGTTCAGGGAGGAGGGTAACTAGCAAATATTTTAACACAAACAAGCAAAAGGTGAAAGATGAAAAAGAAACGAAGGAGTTACCTGCTAAAAGAAAGAATGTGAAGGACAGTGAAGATATACCAGAGCCTAAGAAAGTTCGTGAAGATGTTGGAGATGATTCTGTCTTGCCCACCAATAAAAAGAAGTTAGCTGAGGCCACTCCGACAAAAAAATTGAAGAGTGGATCAGGTCGGGGTATTCCCAAAAAATCTGTAGTTTTGGAAGAAAGTGATGAAGATGATGACAAAGGTGCCGTTTCTGCTGTTAAATCTGCTGGAAGGGGTGGTGGTGGAAGAGGAGCACCTGGGAGAGGTAGAGGGGGCGGTAGGGGTGGATTCATGAATTTTGGAGAAAGAAAAGATCCCCCACACAAAGGAGAAAAGGAAGTCCCTGAAGGTGCTCCTAACTGTTTAGCTGGCTTGACATTTGTGATCAGTGGAACACTGGATAGTTTGGAACGTGAAGAAGCTGAAGATTTGATTAAACGCCATGGTGGCCGTGTCACTGGATCAGTCAGCAAGAAAACGAATTATCTGTTATGTGATGAAGATATTGGGGGGCGGAAGTCTGAAAAGGCCAAAGAGCTAGGAACGTCCTTCCTCACGGAGGATGGATTGTTTGATATGGTTCGAGCATCAAAACCTGCTAAAGCTCCTTCACAAGCAGAAAATAAACCTGTGAATAAGGCTGTTGCAGTAGCGCCAAAAGTTTCTCCGAAACCCCTAGTTAAGGTCCCTCTGTCTTCACGCTCACCTTCTAAGCAGGCTAAGCCAATGGCTGCTACTACTGTTCAATCTTCTGTGACGTGGACAGAGAAATATCGACCTAAAGATCCAAAGGATATCATAGGGAACCAGTCACTTATTGTTCAACTTCGTAATTGGTTGAAAGCTTGGAACGAGCAATTTTCAGACACTGGTAACAAAAAAAAAGGAAAAAAGCAAAATGACTCTGTTTTGAAAAAAGCTGTCTTGTTAAGTGGAACCCCTGGTATAGGGAAAACAACTTCAGCAAAGTTGGTCTGTCAGGAGCTTGGTTTCCAAGCCATAGAGGTAAATGCTAGTGATAGCCGTGGAAAAGCTGATAGCAAAATTGAGAAAGGAATTAGTGGAAGCAAGACAAATTCTGTTAAGGAGCTTGTAACCAATGAGTCTATTGGTGCTAATATGGAACGGTCCAAGATTTCCAAATCTGTGCTCATTATGGATGAGGTTGATGGGATGTCAGCTGGTGATAGGGGTGGTGTTGCTGATCTTATTGCTAGCATTAAGATATCGAAAATTCCTATTATCTGCATTTGCAATGACCGTTACAGCCAGAAACTTAAAAGCCTTGTGAACTACTGTTTGCTTCTAAGTTTTCGGAAGCCTACAAAGCAACAGATGGCAAAGAGGTTGATGGATGTTGCAAAGGCTGAAGGCCTTCAAGTTAATGAGATTGCACTTGAGGAACTAGCAGAAAGAGTTAATGGAGATGTGCGAATGGCAGTAAACCAGTTACAGTATATGAGCCTCTCTATGTCTGTTATCAACTATGATGACATTAGACAACGCTTTCTTACCAATGCAAAGGATGAAGACATTTCACCATTCACGGCTGTTGATAAGCTTTTTGGTTTTAATGCTGGGAAGTTGAGAATGGATGAGAGGATAAATCTTAGCATGAGTGATCCTGATCTTGTTCCTCTTCTTATTCAGGAAAATTATATTAATTATAAACCAAGCTTGGCTGGTAAGGATGACAATGGCATAAAACGCATGAACCTGATTGCCCGTGCTGCTGAGTCTATTGCTGATGGGGATATAGTGAATGTTCAGATTCGCAGATATCGACAGTGGCAGCTCTCTCAAGCTAGTTGTACATCAACATGCATAATTCCATCATCATTGTTGCATGGGCAAAGAGAAATACTTGAACAGGGAGAACGAAATTTCAACCGGTTTGGTGGATGGCTTGGGAAGAACTCGACAATGGGAAAAAACTTTAGGCTTTTGGATGATCTTCATGTTCACATTCTTGCTTCTCGTGAATCTAGTTCAGGAAGGGATACCATTCGCATGGAATATCTCACTCTTATTCTTAAACGATTGACTGAACCCCTACGAACCCTGCCTAAGGCTGAAGCGGTTCAACAAGTTGTGGAATTCATGAATACATACTCTATCAGTCAGGAAGATTTTGATACTATAGTAGAGTTATCAAAATTCAAGGGTCATCCTAATCCACTAGATGGCATACAGCCTGCCATTAAGTCAGCTTTGACAAAAGCCTACAAAGAGCAAAGCAAATCTCGGGTGGTTCGAGTTGCCGACCAAATAACACTTCCTGGTGTAAAGAAGGCCCCTAAGAAGCGGATTGCTGCTATACTTGAACCAGCTGAGGAAGGAGGCGAAAAAGGGGAAGGTGACACCTCGGACCAGAGTGAAGAAGAGAACACGTCTGATACAGAAGAGTTGGAAGGCATCGCCAAGGGTGAGAAGCTGCAATCCGAACTTCAAAGCTGGAATTCAAAAGCCACGGAAGTACAGTTGGAACTGAAGGGAACGGGTAATTCAAGTTCCAAGAAGGCATCGGGTGGTAGAGGTAAAGCTGCTTCTACATCTGGGAAGAAGGTTGCTCAAGCTCCAAAAAGAAAAAGGTGA 2817 0.4295 MSDIRKWFMKSHDKGNNAAPSKPSNQPKPSSDKPQSEKNVAGGQESSGRRVTSKYFNTNKQKVKDEKETKELPAKRKNVKDSEDIPEPKKVREDVGDDSVLPTNKKKLAEATPTKKLKSGSGRGIPKKSVVLEESDEDDDKGAVSAVKSAGRGGGGRGAPGRGRGGGRGGFMNFGERKDPPHKGEKEVPEGAPNCLAGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIGGRKSEKAKELGTSFLTEDGLFDMVRASKPAKAPSQAENKPVNKAVAVAPKVSPKPLVKVPLSSRSPSKQAKPMAATTVQSSVTWTEKYRPKDPKDIIGNQSLIVQLRNWLKAWNEQFSDTGNKKKGKKQNDSVLKKAVLLSGTPGIGKTTSAKLVCQELGFQAIEVNASDSRGKADSKIEKGISGSKTNSVKELVTNESIGANMERSKISKSVLIMDEVDGMSAGDRGGVADLIASIKISKIPIICICNDRYSQKLKSLVNYCLLLSFRKPTKQQMAKRLMDVAKAEGLQVNEIALEELAERVNGDVRMAVNQLQYMSLSMSVINYDDIRQRFLTNAKDEDISPFTAVDKLFGFNAGKLRMDERINLSMSDPDLVPLLIQENYINYKPSLAGKDDNGIKRMNLIARAAESIADGDIVNVQIRRYRQWQLSQASCTSTCIIPSSLLHGQREILEQGERNFNRFGGWLGKNSTMGKNFRLLDDLHVHILASRESSSGRDTIRMEYLTLILKRLTEPLRTLPKAEAVQQVVEFMNTYSISQEDFDTIVELSKFKGHPNPLDGIQPAIKSALTKAYKEQSKSRVVRVADQITLPGVKKAPKKRIAAILEPAEEGGEKGEGDTSDQSEEENTSDTEELEGIAKGEKLQSELQSWNSKATEVQLELKGTGNSSSKKASGGRGKAASTSGKKVAQAPKRKR* 939
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phac11g01457 938 SMART BRCT_7 193 271 IPR001357 -
Phac11g01457 938 Pfam Replication factor RFC1 C terminal domain 655 817 IPR013725 GO:0003689|GO:0005524|GO:0005663|GO:0006260
Phac11g01457 938 SMART AAA_5 378 516 IPR003593 GO:0016887
Phac11g01457 938 FunFam Replication factor C subunit 1 587 696 - -
Phac11g01457 938 MobiDBLite consensus disorder prediction 1 192 - -
Phac11g01457 938 MobiDBLite consensus disorder prediction 59 113 - -
Phac11g01457 938 CDD AAA 379 478 - -
Phac11g01457 938 SUPERFAMILY BRCT domain 191 272 IPR036420 -
Phac11g01457 938 MobiDBLite consensus disorder prediction 848 938 - -
Phac11g01457 938 PANTHER CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 16 913 - -
Phac11g01457 938 FunFam Replication factor C subunit 1 515 586 - -
Phac11g01457 938 CDD BRCT_RFC1 191 269 - -
Phac11g01457 938 Gene3D - 587 696 - -
Phac11g01457 938 FunFam Replication factor C subunit 1 326 514 - -
Phac11g01457 938 MobiDBLite consensus disorder prediction 17 58 - -
Phac11g01457 938 FunFam Replication factor C subunit 1 167 270 - -
Phac11g01457 938 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 326 575 IPR027417 -
Phac11g01457 938 MobiDBLite consensus disorder prediction 887 919 - -
Phac11g01457 938 Pfam BRCA1 C Terminus (BRCT) domain 193 267 IPR001357 -
Phac11g01457 938 CDD HLD_clamp_RFC 515 573 - -
Phac11g01457 938 MobiDBLite consensus disorder prediction 129 145 - -
Phac11g01457 938 Gene3D - 515 585 - -
Phac11g01457 938 Gene3D - 326 514 IPR027417 -
Phac11g01457 938 SUPERFAMILY post-AAA+ oligomerization domain-like 586 731 IPR008921 GO:0003677|GO:0006260
Phac11g01457 938 PIRSF RFC1 158 917 IPR012178 GO:0003689|GO:0005524|GO:0005663|GO:0006260|GO:0006281
Phac11g01457 938 PIRSF RFC1 1 168 IPR012178 GO:0003689|GO:0005524|GO:0005663|GO:0006260|GO:0006281
Phac11g01457 938 MobiDBLite consensus disorder prediction 175 189 - -
Phac11g01457 938 ProSiteProfiles BRCT domain profile. 191 272 IPR001357 -
Phac11g01457 938 Pfam ATPase family associated with various cellular activities (AAA) 382 481 IPR003959 GO:0005524|GO:0016887
Phac11g01457 938 Gene3D BRCT domain 168 270 IPR036420 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phac11g01457 Phac-Chr11 11901418 11912769 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Phac11g01457 1 898 Core DNA Replication Machinery Family AT5G22010 66.739 0.0 1117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Phac11g01457 K10754 - gmx:100790070 1518.06